Human Gene SELP (ENST00000263686.11_7) from GENCODE V47lift37
  Description: selectin P (from RefSeq NM_003005.4)
Gencode Transcript: ENST00000263686.11_7
Gencode Gene: ENSG00000174175.17_15
Transcript (Including UTRs)
   Position: hg19 chr1:169,558,087-169,599,362 Size: 41,276 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr1:169,559,386-169,599,312 Size: 39,927 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:169,558,087-169,599,362)mRNA (may differ from genome)Protein (830 aa)
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-  Comments and Description Text from UniProtKB
  ID: LYAM3_HUMAN
DESCRIPTION: RecName: Full=P-selectin; AltName: Full=CD62 antigen-like family member P; AltName: Full=Granule membrane protein 140; Short=GMP-140; AltName: Full=Leukocyte-endothelial cell adhesion molecule 3; Short=LECAM3; AltName: Full=Platelet activation dependent granule-external membrane protein; Short=PADGEM; AltName: CD_antigen=CD62P; Flags: Precursor;
FUNCTION: Ca(2+)-dependent receptor for myeloid cells that binds to carbohydrates on neutrophils and monocytes. Mediates the interaction of activated endothelial cells or platelets with leukocytes. The ligand recognized is sialyl-Lewis X. Mediates rapid rolling of leukocyte rolling over vascular surfaces during the initial steps in inflammation through interaction with PSGL1.
SUBUNIT: Interacts with SNX17. Interacts with PSGL1/SEPL and PODXL2 and mediates neutrophil adhesion and leukocyte rolling. This interaction requires the sialyl-Lewis X epitope of PSGL1 and PODXL2, and specific tyrosine sulfation on PSGL1.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Stored in the alpha-granules of platelets and Weibel-Palade bodies of endothelial cells. Upon cell activation by agonists, P-selectin is transported rapidly to the cell surface.
DISEASE: Defects in SELP may be a cause of susceptibility to ischemic stroke (ISCHSTR) [MIM:601367]; also known as cerebrovascular accident or cerebral infarction. A stroke is an acute neurologic event leading to death of neural tissue of the brain and resulting in loss of motor, sensory and/or cognitive function. Ischemic strokes, resulting from vascular occlusion, is considered to be a highly complex disease consisting of a group of heterogeneous disorders with multiple genetic and environmental risk factors.
SIMILARITY: Belongs to the selectin/LECAM family.
SIMILARITY: Contains 1 C-type lectin domain.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 9 Sushi (CCP/SCR) domains.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/selp/";
WEB RESOURCE: Name=Functional Glycomics Gateway - Glycan Binding; Note=P-selectin; URL="http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_354";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SELP
Diseases sorted by gene-association score: arteriosclerosis obliterans (28), immune-complex glomerulonephritis (22), intermittent claudication (21), peripheral vascular disease (18), gray platelet syndrome (16), intracranial arteriosclerosis (15), carotid stenosis (15), ehrlichiosis (12), peripheral artery disease (12), mitral valve stenosis (11), cerebrovascular disease (11), von willebrand's disease (10), venous insufficiency (10), thrombocytopenia due to platelet alloimmunization (10), leukocyte adhesion deficiency (10), thrombotic thrombocytopenic purpura (10), acute myocardial infarction (9), blood platelet disease (9), vascular disease (9), retinal vascular occlusion (9), thrombocytosis (8), type 2b von willebrand disease (8), maxillary sinusitis (8), systemic scleroderma (8), essential thrombocythemia (8), heparin-induced thrombocytopenia (8), antiphospholipid syndrome (7), glanzmann thrombasthenia (7), quebec platelet disorder (7), chronic venous insufficiency (7), thrombocytopenic purpura, autoimmune (7), portal vein thrombosis (7), coronary artery disease (7), stroke, ischemic (6), thrombasthenia (6), sickle cell disease (6), generalized atherosclerosis (6), clopidogrel resistance (6), carotid artery thrombosis (5), intermediate coronary syndrome (5), obstructive sleep apnea (5), malaria (5), hermansky-pudlak syndrome 3 (5), common cold (5), primary thrombocytopenia (5), stormorken syndrome (5), multiple symmetrical lipomatosis (5), thrombotic thrombocytopenic purpura, acquired (4), griscelli syndrome, type 1 (4), thrombosis (4), transient global amnesia (4), atrial fibrillation (4), ischemia (3), myocardial infarction (3), arteriosclerosis (3), artery disease (3), asthma (2), autoinflammation, lipodystrophy, and dermatosis syndrome (2), diabetes mellitus, insulin-dependent (2), hypertension, essential (1), diabetes mellitus, noninsulin-dependent (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.02 RPKM in Lung
Total median expression: 124.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -8.0050-0.160 Picture PostScript Text
3' UTR -178.80614-0.291 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001304 - C-type_lectin
IPR016186 - C-type_lectin-like
IPR018378 - C-type_lectin_CS
IPR016187 - C-type_lectin_fold
IPR016060 - Complement_control_module
IPR000742 - EG-like_dom
IPR013032 - EGF-like_CS
IPR002396 - Selectin_superfamily
IPR000436 - Sushi_SCR_CCP

Pfam Domains:
PF00059 - Lectin C-type domain
PF00084 - Sushi repeat (SCR repeat)

SCOP Domains:
56436 - C-type lectin-like
57535 - Complement control module/SCR domain
57196 - EGF/Laminin
57184 - Growth factor receptor domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1FSB - NMR 1G1Q - X-ray 1G1R - X-ray 1G1S - X-ray MuPIT 1HES - X-ray 1KJD - Model


ModBase Predicted Comparative 3D Structure on P16109
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001530 lipopolysaccharide binding
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008201 heparin binding
GO:0030246 carbohydrate binding
GO:0033691 sialic acid binding
GO:0042806 fucose binding
GO:0043208 glycosphingolipid binding
GO:0046872 metal ion binding
GO:0048306 calcium-dependent protein binding
GO:0070492 oligosaccharide binding

Biological Process:
GO:0002576 platelet degranulation
GO:0002687 positive regulation of leukocyte migration
GO:0006954 inflammatory response
GO:0007155 cell adhesion
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 leukocyte cell-cell adhesion
GO:0010572 positive regulation of platelet activation
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0032496 response to lipopolysaccharide
GO:0033623 regulation of integrin activation
GO:0035584 calcium-mediated signaling using intracellular calcium source
GO:0050829 defense response to Gram-negative bacterium
GO:0050900 leukocyte migration
GO:0050901 leukocyte tethering or rolling

Cellular Component:
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031088 platelet dense granule membrane
GO:0031092 platelet alpha granule membrane


-  Descriptions from all associated GenBank mRNAs
  LF205427 - JP 2014500723-A/12930: Polycomb-Associated Non-Coding RNAs.
LP895761 - Sequence 625 from Patent EP3253886.
BC028067 - Homo sapiens selectin P (granule membrane protein 140kDa, antigen CD62), mRNA (cDNA clone IMAGE:5212431), partial cds.
BC068533 - Homo sapiens selectin P (granule membrane protein 140kDa, antigen CD62), mRNA (cDNA clone MGC:87370 IMAGE:30349489), complete cds.
M25322 - Human granule membrane protein-140 mRNA, complete cds.
LF320382 - JP 2014500723-A/127885: Polycomb-Associated Non-Coding RNAs.
JD063036 - Sequence 44060 from Patent EP1572962.
LF320381 - JP 2014500723-A/127884: Polycomb-Associated Non-Coding RNAs.
JD088350 - Sequence 69374 from Patent EP1572962.
JD268392 - Sequence 249416 from Patent EP1572962.
JD094471 - Sequence 75495 from Patent EP1572962.
JD246241 - Sequence 227265 from Patent EP1572962.
JD419731 - Sequence 400755 from Patent EP1572962.
JD508701 - Sequence 489725 from Patent EP1572962.
JD172169 - Sequence 153193 from Patent EP1572962.
AK312884 - Homo sapiens cDNA, FLJ93328, highly similar to Homo sapiens selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA.
AB527801 - Synthetic construct DNA, clone: pF1KB5791, Homo sapiens SELP gene for selectin P, without stop codon, in Flexi system.
KU178327 - Homo sapiens selectin P isoform 1 (SELP) mRNA, partial cds, alternatively spliced.
KU178328 - Homo sapiens selectin P isoform 3 (SELP) mRNA, complete cds, alternatively spliced.
AY367063 - Homo sapiens P-selectin mRNA, partial cds.
JD060899 - Sequence 41923 from Patent EP1572962.
MA441004 - JP 2018138019-A/12930: Polycomb-Associated Non-Coding RNAs.
MA555959 - JP 2018138019-A/127885: Polycomb-Associated Non-Coding RNAs.
MA555958 - JP 2018138019-A/127884: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P16109 (Reactome details) participates in the following event(s):

R-HSA-202724 P-selectin binds P-selectin ligand
R-HSA-481010 Surface deployment of platelet dense granule membrane components
R-HSA-481044 Surface deployment of platelet alpha granule membrane components
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-114608 Platelet degranulation
R-HSA-109582 Hemostasis
R-HSA-76005 Response to elevated platelet cytosolic Ca2+
R-HSA-76002 Platelet activation, signaling and aggregation

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000263686.1, ENST00000263686.10, ENST00000263686.2, ENST00000263686.3, ENST00000263686.4, ENST00000263686.5, ENST00000263686.6, ENST00000263686.7, ENST00000263686.8, ENST00000263686.9, GMRP, GRMP, LYAM3_HUMAN, NM_003005, P16109, Q5R344, Q8IVD1, uc317hlp.1, uc317hlp.2
UCSC ID: ENST00000263686.11_7
RefSeq Accession: NM_003005.4
Protein: P16109 (aka LYAM3_HUMAN or LEM3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.