Human Gene SCRIB (ENST00000356994.7_10) from GENCODE V47lift37
  Description: scribble planar cell polarity protein, transcript variant 1 (from RefSeq NM_182706.5)
Gencode Transcript: ENST00000356994.7_10
Gencode Gene: ENSG00000180900.20_18
Transcript (Including UTRs)
   Position: hg19 chr8:144,873,095-144,897,943 Size: 24,849 Total Exon Count: 37 Strand: -
Coding Region
   Position: hg19 chr8:144,873,333-144,897,542 Size: 24,210 Coding Exon Count: 37 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:144,873,095-144,897,943)mRNA (may differ from genome)Protein (1655 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SCRIB_HUMAN
DESCRIPTION: RecName: Full=Protein scribble homolog; Short=Scribble; Short=hScrib; AltName: Full=Protein LAP4;
FUNCTION: Scaffold protein involved in different aspects of polarized cells differentiation regulating epithelial and neuronal morphogenesis. Most probably functions in the establishment of apico-basal cell polarity. May function in cell proliferation regulating progression from G1 to S phase and as a positive regulator of apoptosis for instance during acinar morphogenesis of the mammary epithelium. May also function in cell migration and adhesion and hence regulate cell invasion through MAPK signaling. May play a role in exocytosis and in the targeting synaptic vesicles to synapses. Functions as an activator of Rac GTPase activity.
SUBUNIT: Interacts (via PDZ domains) with VANGL2. Interacts with CTNNB1 and MAPK12 (By similarity). Interacts with UBE3A and HPV E6. Interacts with PAK1 and PAK2. Interacts with ARHGEF7 and GIT1; interacts directly with ARHGEF7. Interacts (via PDZ domains) with LPP and TRIP6; the interaction is direct. Interacts (via PDZ domains) with TJP2. Interacts (via PDZ domains) with APC; may mediate APC targeting to adherens junctions of epithelial cells. Interacts (via PDZ domains) with TSHR; regulates TSHR trafficking and function. Interacts with MCC. Interacts (via fourth PDZ domain) with tick-borne encephalitis virus NS5 protein; this interaction inhibits SCRIB and downstream STAT1 phosphorylation, thereby preventing activation of JAK-STAT signaling pathway.
INTERACTION: P27361:MAPK3; NbExp=2; IntAct=EBI-357345, EBI-73995;
SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein. Cell junction, adherens junction. Cytoplasm. Note=Targeting to cell-cell junctions which is CDH1-dependent is required for the pro-apoptotic activity. Localizes to neuronal post- and pre- synaptic regions.
TISSUE SPECIFICITY: Expressed in kidney, skeletal muscles, liver, lung, breast, intestine, placenta and skin mainly in epithelial cells (at protein level).
PTM: Ubiquitinated; targeted for UBE3A-dependent multiubiquitination in the presence of high-risk HPV E6 proteins and degraded.
DISEASE: Defects in SCRIB are a cause of neural tube defects (NTD) [MIM:182940]. NTD are congenital malformations of the central nervous system and adjacent structures related to defective neural tube closure during the first trimester of pregnancy. Failure of neural tube closure can occur at any level of the embryonic axis. Common NTD forms include anencephaly, myelomeningocele and spina bifida, which result from the failure of fusion in the cranial and spinal region of the neural tube. NTDs have a multifactorial etiology encompassing both genetic and environmental components.
SIMILARITY: Belongs to the LAP (LRR and PDZ) protein family.
SIMILARITY: Contains 16 LRR (leucine-rich) repeats.
SIMILARITY: Contains 4 PDZ (DHR) domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SCRIB
Diseases sorted by gene-association score: neural tube defects* (114), tick-borne encephalitis (28), craniorachischisis (10), myelomeningocele (9), anencephaly (7), avian influenza (5), encephalitis (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.69 RPKM in Esophagus - Mucosa
Total median expression: 885.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -227.50401-0.567 Picture PostScript Text
3' UTR -71.20238-0.299 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001611 - Leu-rich_rpt
IPR025875 - Leu-rich_rpt_2_copies
IPR003591 - Leu-rich_rpt_typical-subtyp
IPR001478 - PDZ

Pfam Domains:
PF00595 - PDZ domain
PF13180 - PDZ domain
PF13855 - Leucine rich repeat
PF17820 - PDZ domain

SCOP Domains:
50156 - PDZ domain-like
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1UJU - NMR MuPIT 1WHA - NMR MuPIT 1X5Q - NMR MuPIT 2W4F - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14160
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004385 guanylate kinase activity
GO:0005515 protein binding
GO:0035255 ionotropic glutamate receptor binding
GO:0045296 cadherin binding

Biological Process:
GO:0001843 neural tube closure
GO:0001921 positive regulation of receptor recycling
GO:0002093 auditory receptor cell morphogenesis
GO:0007268 chemical synaptic transmission
GO:0007275 multicellular organism development
GO:0008104 protein localization
GO:0008283 cell proliferation
GO:0016032 viral process
GO:0016080 synaptic vesicle targeting
GO:0016331 morphogenesis of embryonic epithelium
GO:0016477 cell migration
GO:0021747 cochlear nucleus development
GO:0030154 cell differentiation
GO:0030683 evasion or tolerance by virus of host immune response
GO:0035089 establishment of apical/basal cell polarity
GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
GO:0039503 suppression by virus of host innate immune response
GO:0039563 suppression by virus of host STAT1 activity
GO:0039564 suppression by virus of host STAT2 activity
GO:0042060 wound healing
GO:0043065 positive regulation of apoptotic process
GO:0043113 receptor clustering
GO:0043615 astrocyte cell migration
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity
GO:0045930 negative regulation of mitotic cell cycle
GO:0046037 GMP metabolic process
GO:0046710 GDP metabolic process
GO:0048488 synaptic vesicle endocytosis
GO:0050918 positive chemotaxis
GO:0060088 auditory receptor cell stereocilium organization
GO:0060561 apoptotic process involved in morphogenesis
GO:0060603 mammary gland duct morphogenesis
GO:0071896 protein localization to adherens junction
GO:0090630 activation of GTPase activity
GO:0097120 receptor localization to synapse
GO:0098609 cell-cell adhesion
GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane
GO:0098968 neurotransmitter receptor transport postsynaptic membrane to endosome

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0005912 adherens junction
GO:0005913 cell-cell adherens junction
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0016323 basolateral plasma membrane
GO:0030027 lamellipodium
GO:0030054 cell junction
GO:0034750 Scrib-APC-beta-catenin complex
GO:0035748 myelin sheath abaxonal region
GO:0042995 cell projection
GO:0044291 cell-cell contact zone
GO:0070062 extracellular exosome
GO:0098793 presynapse
GO:0008328 ionotropic glutamate receptor complex
GO:0031252 cell leading edge
GO:0042734 presynaptic membrane
GO:0045211 postsynaptic membrane


-  Descriptions from all associated GenBank mRNAs
  LF210317 - JP 2014500723-A/17820: Polycomb-Associated Non-Coding RNAs.
BC014632 - Homo sapiens scribbled homolog (Drosophila), mRNA (cDNA clone IMAGE:3503007), partial cds.
AF318352 - Homo sapiens pp6170 mRNA, complete cds.
BC026045 - Homo sapiens scribbled homolog (Drosophila), mRNA (cDNA clone IMAGE:4634970), with apparent retained intron.
BC009490 - Homo sapiens scribbled homolog (Drosophila), mRNA (cDNA clone IMAGE:3936863), partial cds.
BC036905 - Homo sapiens scribbled homolog (Drosophila), mRNA (cDNA clone IMAGE:4524473), partial cds.
BC063590 - Homo sapiens scribbled homolog (Drosophila), mRNA (cDNA clone IMAGE:4443249), with apparent retained intron.
BC044627 - Homo sapiens scribbled homolog (Drosophila), mRNA (cDNA clone IMAGE:4588265), partial cds.
AY062238 - Homo sapiens scribble (SCRIB) mRNA, complete cds.
AF271734 - Homo sapiens SCRIB1 variant N1 (SCRIB1) mRNA, complete cds.
AF240677 - Homo sapiens CRIB1 (CRIB1) mRNA, complete cds.
D63481 - Homo sapiens mRNA for KIAA0147 protein.
JD561676 - Sequence 542700 from Patent EP1572962.
LF214026 - JP 2014500723-A/21529: Polycomb-Associated Non-Coding RNAs.
JD043501 - Sequence 24525 from Patent EP1572962.
JD378927 - Sequence 359951 from Patent EP1572962.
AB383767 - Synthetic construct DNA, clone: pF1KSDA0147, Homo sapiens SCRIB gene for scribble protein, complete cds, without stop codon, in Flexi system.
BC146321 - Synthetic construct Homo sapiens clone IMAGE:100015198, MGC:180244 scribbled homolog (Drosophila) (SCRIB) mRNA, encodes complete protein.
LF337072 - JP 2014500723-A/144575: Polycomb-Associated Non-Coding RNAs.
LF337073 - JP 2014500723-A/144576: Polycomb-Associated Non-Coding RNAs.
LF337074 - JP 2014500723-A/144577: Polycomb-Associated Non-Coding RNAs.
LF337075 - JP 2014500723-A/144578: Polycomb-Associated Non-Coding RNAs.
LF337078 - JP 2014500723-A/144581: Polycomb-Associated Non-Coding RNAs.
HZ408791 - JP 2015528002-A/1388: CHIRAL CONTROL.
HZ461461 - WO 2015190586-A/274: Kit and method for detecting colon cancer.
HZ462316 - WO 2015190591-A/471: Kit and method for detecting breast cancer.
HZ463211 - WO 2015194535-A/305: Kit and method for detecting stomach cancer.
HZ465296 - WO 2015194627-A/349: Kit and method for detecting esophageal cancer.
LG052125 - KR 1020150036642-A/1391: CHIRAL CONTROL.
LY496479 - KR 1020170018406-A/349: ESOPHAGEAL CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LY497104 - KR 1020170016485-A/274: COLORECTAL CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LY499319 - KR 1020170018412-A/471: BREAST CANCER DETECTION KIT OR DEVICE, AND METHOD FOR DETECTING BREAST CANCER.
LY500024 - KR 1020170019425-A/305: STOMACH CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LZ238597 - WO 2017171048-A/258: Kit, device and method for detecting early pancreatic cancer or precancerous lesion of pancreas.
MS880634 - Sequence 471 from Patent EP3156498.
MS884291 - Sequence 274 from Patent EP3156499.
MS885143 - Sequence 305 from Patent EP3156503.
MS994487 - Sequence 349 from Patent EP3159406.
LF337080 - JP 2014500723-A/144583: Polycomb-Associated Non-Coding RNAs.
MA449603 - JP 2018138019-A/21529: Polycomb-Associated Non-Coding RNAs.
MA445894 - JP 2018138019-A/17820: Polycomb-Associated Non-Coding RNAs.
MA572649 - JP 2018138019-A/144575: Polycomb-Associated Non-Coding RNAs.
MA572650 - JP 2018138019-A/144576: Polycomb-Associated Non-Coding RNAs.
MA572651 - JP 2018138019-A/144577: Polycomb-Associated Non-Coding RNAs.
MA572652 - JP 2018138019-A/144578: Polycomb-Associated Non-Coding RNAs.
MA572655 - JP 2018138019-A/144581: Polycomb-Associated Non-Coding RNAs.
MA572657 - JP 2018138019-A/144583: Polycomb-Associated Non-Coding RNAs.
MA822523 - WO 2019004436-A/336: Kit, device, and method for detection of lung cancer.
LY616361 - KR 1020180129785-A/258: KIT OR DEVICE FOR DETECTING EARLY STAGE PANCREATIC CANCER OR PANCREATIC CANCER PRECURSOR LESIONS AND DETECTION METHOD THEREFOR.
MB473059 - WO 2019208671-A/458: Kit or device and method for detecting bladder cancer.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14160 (Reactome details) participates in the following event(s):

R-HSA-4608862 SCRIB is required for asymmetric membrane localization of VANGL2
R-HSA-4608866 VANGL2 is required for asymmetric membrane localization of FZD3
R-HSA-4608870 Asymmetric localization of PCP proteins
R-HSA-4086400 PCP/CE pathway
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-195721 Signaling by WNT
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: CRIB1, ENST00000356994.1, ENST00000356994.2, ENST00000356994.3, ENST00000356994.4, ENST00000356994.5, ENST00000356994.6, KIAA0147, LAP4, NM_182706, Q14160, Q6P496, Q7Z5D1, Q8WWV8, Q96C69, Q96GG1, SCRB1, SCRIB_HUMAN, uc317zve.1, uc317zve.2, VARTUL
UCSC ID: ENST00000356994.7_10
RefSeq Accession: NM_182706.5
Protein: Q14160 (aka SCRIB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.