Human Gene RPSA2 (ENST00000484897.4_2) from GENCODE V47lift37
  Description: ribosomal protein SA pseudogene 58, transcript variant 7 (from RefSeq NM_001387846.1)
Gencode Transcript: ENST00000484897.4_2
Gencode Gene: ENSG00000288920.1_2
Transcript (Including UTRs)
   Position: hg19 chr19:23,945,806-24,011,670 Size: 65,865 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr19:24,009,964-24,010,851 Size: 888 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:23,945,806-24,011,670)mRNA (may differ from genome)Protein (295 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGeneCardsMGIPubMedUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.44 RPKM in Testis
Total median expression: 3.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -132.80433-0.307 Picture PostScript Text
3' UTR -174.00819-0.212 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC071971 - Homo sapiens ribosomal protein SA pseudogene, mRNA (cDNA clone IMAGE:6584998).
D28372 - Homo sapiens mRNA for laminin binding protein, 5'UTR region.
JD021217 - Sequence 2241 from Patent EP1572962.
BC068062 - Homo sapiens ribosomal protein SA, mRNA (cDNA clone MGC:78527 IMAGE:5427114), complete cds.
JD031309 - Sequence 12333 from Patent EP1572962.
KJ900699 - Synthetic construct Homo sapiens clone ccsbBroadEn_10093 RPSAP58 gene, encodes complete protein.
JD024801 - Sequence 5825 from Patent EP1572962.
JD021508 - Sequence 2532 from Patent EP1572962.
JD292109 - Sequence 273133 from Patent EP1572962.
JD268759 - Sequence 249783 from Patent EP1572962.
JD268760 - Sequence 249784 from Patent EP1572962.
JD034630 - Sequence 15654 from Patent EP1572962.
LF205265 - JP 2014500723-A/12768: Polycomb-Associated Non-Coding RNAs.
DQ595111 - Homo sapiens piRNA piR-61223, complete sequence.
JD518340 - Sequence 499364 from Patent EP1572962.
DQ585854 - Homo sapiens piRNA piR-52966, complete sequence.
LF318786 - JP 2014500723-A/126289: Polycomb-Associated Non-Coding RNAs.
JD523518 - Sequence 504542 from Patent EP1572962.
LF325261 - JP 2014500723-A/132764: Polycomb-Associated Non-Coding RNAs.
JD059231 - Sequence 40255 from Patent EP1572962.
JD123924 - Sequence 104948 from Patent EP1572962.
LF379431 - JP 2014500723-A/186934: Polycomb-Associated Non-Coding RNAs.
DQ592150 - Homo sapiens piRNA piR-59262, complete sequence.
DQ585311 - Homo sapiens piRNA piR-52423, complete sequence.
JD283515 - Sequence 264539 from Patent EP1572962.
M14199 - Human laminin receptor (2H5 epitope) mRNA, 5' end.
LF318787 - JP 2014500723-A/126290: Polycomb-Associated Non-Coding RNAs.
JD133711 - Sequence 114735 from Patent EP1572962.
JD044791 - Sequence 25815 from Patent EP1572962.
JD247592 - Sequence 228616 from Patent EP1572962.
JD158024 - Sequence 139048 from Patent EP1572962.
JD367850 - Sequence 348874 from Patent EP1572962.
LF379435 - JP 2014500723-A/186938: Polycomb-Associated Non-Coding RNAs.
JD185082 - Sequence 166106 from Patent EP1572962.
JD185083 - Sequence 166107 from Patent EP1572962.
JD488452 - Sequence 469476 from Patent EP1572962.
JD494328 - Sequence 475352 from Patent EP1572962.
LQ990186 - Sequence 2 from Patent WO2013042053.
MA560838 - JP 2018138019-A/132764: Polycomb-Associated Non-Coding RNAs.
MA440842 - JP 2018138019-A/12768: Polycomb-Associated Non-Coding RNAs.
MA554363 - JP 2018138019-A/126289: Polycomb-Associated Non-Coding RNAs.
MA615008 - JP 2018138019-A/186934: Polycomb-Associated Non-Coding RNAs.
MA554364 - JP 2018138019-A/126290: Polycomb-Associated Non-Coding RNAs.
MA615012 - JP 2018138019-A/186938: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A8I5KQE6, ENST00000484897.1, ENST00000484897.2, ENST00000484897.3, NM_001387846, RPSA , RPSA2 , RPSA2_HUMAN, RPSAP58, uc322eqo.1, uc322eqo.2
UCSC ID: ENST00000484897.4_2
RefSeq Accession: NM_001355283.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.