Human Gene RPS6KA5 (ENST00000614987.5_9) from GENCODE V47lift37
  Description: ribosomal protein S6 kinase A5, transcript variant 1 (from RefSeq NM_004755.4)
Gencode Transcript: ENST00000614987.5_9
Gencode Gene: ENSG00000100784.12_17
Transcript (Including UTRs)
   Position: hg19 chr14:91,314,205-91,526,985 Size: 212,781 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr14:91,338,418-91,526,778 Size: 188,361 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:91,314,205-91,526,985)mRNA (may differ from genome)Protein (802 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KS6A5_HUMAN
DESCRIPTION: RecName: Full=Ribosomal protein S6 kinase alpha-5; Short=S6K-alpha-5; EC=2.7.11.1; AltName: Full=90 kDa ribosomal protein S6 kinase 5; AltName: Full=Nuclear mitogen- and stress-activated protein kinase 1; AltName: Full=RSK-like protein kinase; Short=RSKL;
FUNCTION: Serine/threonine-protein kinase that is required for the mitogen or stress-induced phosphorylation of the transcription factors CREB1 and ATF1 and for the regulation of the transcription factors RELA, STAT3 and ETV1/ER81, and that contributes to gene activation by histone phosphorylation and functions in the regulation of inflammatory genes. Phosphorylates CREB1 and ATF1 in response to mitogenic or stress stimuli such as UV-C irradiation, epidermal growth factor (EGF) and anisomycin. Plays an essential role in the control of RELA transcriptional activity in response to TNF and upon glucocorticoid, associates in the cytoplasm with the glucocorticoid receptor NR3C1 and contributes to RELA inhibition and repression of inflammatory gene expression. In skeletal myoblasts is required for phosphorylation of RELA at 'Ser-276' during oxidative stress. In erythropoietin-stimulated cells, is necessary for the 'Ser-727' phosphorylation of STAT3 and regulation of its transcriptional potential. Phosphorylates ETV1/ER81 at 'Ser-191' and 'Ser-216', and thereby regulates its ability to stimulate transcription, which may be important during development and breast tumor formation. Directly represses transcription via phosphorylation of 'Ser-1' of histone H2A. Phosphorylates 'Ser-10' of histone H3 in response to mitogenics, stress stimuli and EGF, which results in the transcriptional activation of several immediate early genes, including proto- oncogenes c-fos/FOS and c-jun/JUN. May also phosphorylate 'Ser-28' of histone H3. Mediates the mitogen- and stress-induced phosphorylation of high mobility group protein 1 (HMGN1/HMG14). In lipopolysaccharide-stimulated primary macrophages, acts downstream of the Toll-like receptor TLR4 to limit the production of pro- inflammatory cytokines. Functions probably by inducing transcription of the MAP kinase phosphatase DUSP1 and the anti- inflammatory cytokine interleukin 10 (IL10), via CREB1 and ATF1 transcription factors. Plays a role in neuronal cell death by mediating the downstream effects of excitotoxic injury.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Activated by phosphorylation at Ser-360, Thr- 581 and Thr-700 by MAPK1/ERK2, MAPK3/ERK1 and MAPK14/p38-alpha, and by further autophosphorylation of Ser-212, Ser-376 and Ser-381 by the activated C-terminal kinase domain. The active N-terminal kinase domain finally phosphorylates downstream substrates, as well as Ser-750, Ser-752 and Ser-758 in its own C-terminal region.
SUBUNIT: Forms a complex with either MAPK1/ERK2 or MAPK3/ERK1 in quiescent cells which transiently dissociates following mitogenic stimulation. Also associates with MAPK14/p38-alpha. Activated RPS6KA5 associates with and phosphorylates the NF-kappa-B p65 subunit RELA. Interacts with CREBBP and EP300.
INTERACTION: Q9NYL2:MLTK; NbExp=4; IntAct=EBI-73869, EBI-602273;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Predominantly nuclear. Exported into cytoplasm in response to glucocorticoid.
TISSUE SPECIFICITY: Widely expressed with high levels in heart, brain and placenta. Less abundant in lung, kidney and liver.
PTM: Ser-376 and Thr-581 phosphorylation is required for kinase activity. Ser-376 and Ser-212 are autophosphorylated by the C- terminal kinase domain, and their phosphorylation is essential for the catalytic activity of the N-terminal kinase domain. Phosphorylated at Ser-360, Thr-581 and Thr-700 by MAPK1/ERK2, MAPK3/ERK1 and MAPK14/p38-alpha. Autophosphorylated at Ser-750, Ser-752 and Ser-758 by the N-terminal kinase domain.
MISCELLANEOUS: Enzyme activity requires the presence of both kinase domains.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 2 protein kinase domains.
SEQUENCE CAUTION: Sequence=AAC69577.1; Type=Frameshift; Positions=Several;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.00207-0.464 Picture PostScript Text
3' UTR -7722.2024213-0.319 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR016239 - Ribosomal_S6_kinase_II
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00433 - Protein kinase C terminal domain
PF01163 - RIO1 family
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1VZO - X-ray MuPIT 3KN5 - X-ray MuPIT 3KN6 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O75582
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0001818 negative regulation of cytokine production
GO:0002223 stimulatory C-type lectin receptor signaling pathway
GO:0006355 regulation of transcription, DNA-templated
GO:0006468 protein phosphorylation
GO:0006954 inflammatory response
GO:0007173 epidermal growth factor receptor signaling pathway
GO:0007411 axon guidance
GO:0016310 phosphorylation
GO:0016572 histone phosphorylation
GO:0032793 positive regulation of CREB transcription factor activity
GO:0033129 positive regulation of histone phosphorylation
GO:0035066 positive regulation of histone acetylation
GO:0035556 intracellular signal transduction
GO:0043987 histone H3-S10 phosphorylation
GO:0043988 histone H3-S28 phosphorylation
GO:0043990 histone H2A-S1 phosphorylation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0070498 interleukin-1-mediated signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AF090421 - Homo sapiens ribosome S6 protein kinase mRNA, complete cds.
AK295266 - Homo sapiens cDNA FLJ54679 complete cds, highly similar to Ribosomal protein S6 kinase alpha-5 (EC 2.7.11.1).
AF074393 - Homo sapiens nuclear mitogen- and stress-activated protein kinase-1 (MSK1) mRNA, complete cds.
AF080000 - Homo sapiens RSK-like protein kinase RLPK mRNA, complete cds.
BC017187 - Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 5, mRNA (cDNA clone MGC:1911 IMAGE:3139114), complete cds.
KJ892729 - Synthetic construct Homo sapiens clone ccsbBroadEn_02123 RPS6KA5 gene, encodes complete protein.
KJ905374 - Synthetic construct Homo sapiens clone ccsbBroadEn_14934 RPS6KA5 gene, encodes complete protein.
AK309925 - Homo sapiens cDNA, FLJ99966.
CU677851 - Synthetic construct Homo sapiens gateway clone IMAGE:100018362 5' read RPS6KA5 mRNA.
AK055958 - Homo sapiens cDNA FLJ31396 fis, clone NT2NE1000156.
AK095276 - Homo sapiens cDNA FLJ37957 fis, clone CTONG2009529.
LP896599 - Sequence 1463 from Patent EP3253886.
JD551132 - Sequence 532156 from Patent EP1572962.
JD221570 - Sequence 202594 from Patent EP1572962.
JD244396 - Sequence 225420 from Patent EP1572962.
JD311428 - Sequence 292452 from Patent EP1572962.
JD399969 - Sequence 380993 from Patent EP1572962.
JD119395 - Sequence 100419 from Patent EP1572962.
JD428377 - Sequence 409401 from Patent EP1572962.
JD153651 - Sequence 134675 from Patent EP1572962.
JD064459 - Sequence 45483 from Patent EP1572962.
JD558527 - Sequence 539551 from Patent EP1572962.
JD343956 - Sequence 324980 from Patent EP1572962.
JD559528 - Sequence 540552 from Patent EP1572962.
JD251207 - Sequence 232231 from Patent EP1572962.
JD418801 - Sequence 399825 from Patent EP1572962.
JD311519 - Sequence 292543 from Patent EP1572962.
JD414724 - Sequence 395748 from Patent EP1572962.
JD397020 - Sequence 378044 from Patent EP1572962.
JD311518 - Sequence 292542 from Patent EP1572962.
JD476690 - Sequence 457714 from Patent EP1572962.
JD094071 - Sequence 75095 from Patent EP1572962.
JD256518 - Sequence 237542 from Patent EP1572962.
JD120502 - Sequence 101526 from Patent EP1572962.
JD379585 - Sequence 360609 from Patent EP1572962.
JD243850 - Sequence 224874 from Patent EP1572962.
JD089171 - Sequence 70195 from Patent EP1572962.
JD047348 - Sequence 28372 from Patent EP1572962.
JD304161 - Sequence 285185 from Patent EP1572962.
JD432490 - Sequence 413514 from Patent EP1572962.
JD243311 - Sequence 224335 from Patent EP1572962.
JD097698 - Sequence 78722 from Patent EP1572962.
JD136273 - Sequence 117297 from Patent EP1572962.
JD194910 - Sequence 175934 from Patent EP1572962.
JD136272 - Sequence 117296 from Patent EP1572962.
JD194909 - Sequence 175933 from Patent EP1572962.
JD125664 - Sequence 106688 from Patent EP1572962.
JD306347 - Sequence 287371 from Patent EP1572962.
JD169692 - Sequence 150716 from Patent EP1572962.
JD529424 - Sequence 510448 from Patent EP1572962.
JD143709 - Sequence 124733 from Patent EP1572962.
JD395446 - Sequence 376470 from Patent EP1572962.
JD125663 - Sequence 106687 from Patent EP1572962.
JD487512 - Sequence 468536 from Patent EP1572962.
JD545843 - Sequence 526867 from Patent EP1572962.
JD079665 - Sequence 60689 from Patent EP1572962.
JD079666 - Sequence 60690 from Patent EP1572962.
JD243297 - Sequence 224321 from Patent EP1572962.
JD243298 - Sequence 224322 from Patent EP1572962.
JD211850 - Sequence 192874 from Patent EP1572962.
JD211851 - Sequence 192875 from Patent EP1572962.
JD542382 - Sequence 523406 from Patent EP1572962.
JD231539 - Sequence 212563 from Patent EP1572962.
JD204585 - Sequence 185609 from Patent EP1572962.
JD179687 - Sequence 160711 from Patent EP1572962.
JD497340 - Sequence 478364 from Patent EP1572962.
JD561343 - Sequence 542367 from Patent EP1572962.
JD561342 - Sequence 542366 from Patent EP1572962.
JD481350 - Sequence 462374 from Patent EP1572962.
JD257753 - Sequence 238777 from Patent EP1572962.
JD323787 - Sequence 304811 from Patent EP1572962.
JD247072 - Sequence 228096 from Patent EP1572962.
JD413480 - Sequence 394504 from Patent EP1572962.
JD524495 - Sequence 505519 from Patent EP1572962.
JD198174 - Sequence 179198 from Patent EP1572962.
JD228210 - Sequence 209234 from Patent EP1572962.
JD212779 - Sequence 193803 from Patent EP1572962.
JD488029 - Sequence 469053 from Patent EP1572962.
JD542806 - Sequence 523830 from Patent EP1572962.
JD247071 - Sequence 228095 from Patent EP1572962.
AK126785 - Homo sapiens cDNA FLJ44835 fis, clone BRACE3048565.
JD397444 - Sequence 378468 from Patent EP1572962.
JD070046 - Sequence 51070 from Patent EP1572962.
JD514065 - Sequence 495089 from Patent EP1572962.
JD070045 - Sequence 51069 from Patent EP1572962.
JD514064 - Sequence 495088 from Patent EP1572962.
JD070047 - Sequence 51071 from Patent EP1572962.
JD514066 - Sequence 495090 from Patent EP1572962.
JD321739 - Sequence 302763 from Patent EP1572962.
JD095250 - Sequence 76274 from Patent EP1572962.
JD182707 - Sequence 163731 from Patent EP1572962.
JD131580 - Sequence 112604 from Patent EP1572962.
JD463067 - Sequence 444091 from Patent EP1572962.
JD206746 - Sequence 187770 from Patent EP1572962.
JD321516 - Sequence 302540 from Patent EP1572962.
JD212979 - Sequence 194003 from Patent EP1572962.
JD533799 - Sequence 514823 from Patent EP1572962.
JD141842 - Sequence 122866 from Patent EP1572962.
JD099410 - Sequence 80434 from Patent EP1572962.
JD407538 - Sequence 388562 from Patent EP1572962.
JD566845 - Sequence 547869 from Patent EP1572962.
JD112119 - Sequence 93143 from Patent EP1572962.
JD395564 - Sequence 376588 from Patent EP1572962.
JD277769 - Sequence 258793 from Patent EP1572962.
JD069996 - Sequence 51020 from Patent EP1572962.
JD091559 - Sequence 72583 from Patent EP1572962.
JD091560 - Sequence 72584 from Patent EP1572962.
JD285468 - Sequence 266492 from Patent EP1572962.
JD238320 - Sequence 219344 from Patent EP1572962.
JD135739 - Sequence 116763 from Patent EP1572962.
JD135740 - Sequence 116764 from Patent EP1572962.
JD181977 - Sequence 163001 from Patent EP1572962.
JD222146 - Sequence 203170 from Patent EP1572962.
JD220265 - Sequence 201289 from Patent EP1572962.
JD308250 - Sequence 289274 from Patent EP1572962.
JD228152 - Sequence 209176 from Patent EP1572962.
JD112406 - Sequence 93430 from Patent EP1572962.
JD089527 - Sequence 70551 from Patent EP1572962.
JD279092 - Sequence 260116 from Patent EP1572962.
JD231922 - Sequence 212946 from Patent EP1572962.
JD223817 - Sequence 204841 from Patent EP1572962.
JD538831 - Sequence 519855 from Patent EP1572962.
AL050099 - Homo sapiens mRNA; cDNA DKFZp586C1419 (from clone DKFZp586C1419).
AB209667 - Homo sapiens mRNA for Putative p150 variant protein.
JD229070 - Sequence 210094 from Patent EP1572962.
JD297433 - Sequence 278457 from Patent EP1572962.
JD185644 - Sequence 166668 from Patent EP1572962.
JD409894 - Sequence 390918 from Patent EP1572962.
JD044353 - Sequence 25377 from Patent EP1572962.
JD483860 - Sequence 464884 from Patent EP1572962.
JD443475 - Sequence 424499 from Patent EP1572962.
JD540593 - Sequence 521617 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_p38mapkPathway - p38 MAPK Signaling Pathway
h_erkPathway - Erk1/Erk2 Mapk Signaling pathway
h_mapkPathway - MAPKinase Signaling Pathway
h_crebPathway - Transcription factor CREB and its extracellular signals

Reactome (by CSHL, EBI, and GO)

Protein O75582 (Reactome details) participates in the following event(s):

R-HSA-198669 p38MAPK phosphorylates MSK1
R-HSA-198756 ERK1/2 phosphorylates MSK1
R-HSA-199910 MSK1 activates ATF1
R-HSA-199935 MSK1 activates CREB
R-HSA-374696 Phosphorylation of L1 by p90rsk
R-HSA-5624473 Protein kinase A (PKA) and RPS6KA5 (MSK1) phosphorylates p65 (RELA) subunit
R-HSA-198753 ERK/MAPK targets
R-HSA-375165 NCAM signaling for neurite out-growth
R-HSA-198725 Nuclear Events (kinase and transcription factor activation)
R-HSA-450282 MAPK targets/ Nuclear events mediated by MAP kinases
R-HSA-422475 Axon guidance
R-HSA-199920 CREB phosphorylation
R-HSA-437239 Recycling pathway of L1
R-HSA-5621575 CD209 (DC-SIGN) signaling
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-450294 MAP kinase activation
R-HSA-1266738 Developmental Biology
R-HSA-373760 L1CAM interactions
R-HSA-5621481 C-type lectin receptors (CLRs)
R-HSA-166520 Signaling by NTRKs
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-168249 Innate Immune System
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-168256 Immune System
R-HSA-162582 Signal Transduction
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z2Y5, ENST00000614987.1, ENST00000614987.2, ENST00000614987.3, ENST00000614987.4, KS6A5_HUMAN, MSK1, NM_004755, O75582, O95316, Q96AF7, uc327ppn.1, uc327ppn.2
UCSC ID: ENST00000614987.5_9
RefSeq Accession: NM_004755.4
Protein: O75582 (aka KS6A5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.