Human Gene RPS6KA2 (ENST00000265678.9_11) from GENCODE V47lift37
  Description: ribosomal protein S6 kinase A2, transcript variant 1 (from RefSeq NM_021135.6)
Gencode Transcript: ENST00000265678.9_11
Gencode Gene: ENSG00000071242.13_16
Transcript (Including UTRs)
   Position: hg19 chr6:166,822,852-167,040,739 Size: 217,888 Total Exon Count: 21 Strand: -
Coding Region
   Position: hg19 chr6:166,826,250-167,040,507 Size: 214,258 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:166,822,852-167,040,739)mRNA (may differ from genome)Protein (733 aa)
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KS6A2_HUMAN
DESCRIPTION: RecName: Full=Ribosomal protein S6 kinase alpha-2; Short=S6K-alpha-2; EC=2.7.11.1; AltName: Full=90 kDa ribosomal protein S6 kinase 2; Short=p90-RSK 2; Short=p90RSK2; AltName: Full=MAP kinase-activated protein kinase 1c; Short=MAPK-activated protein kinase 1c; Short=MAPKAP kinase 1c; Short=MAPKAPK-1c; AltName: Full=Ribosomal S6 kinase 3; Short=RSK-3; AltName: Full=pp90RSK3;
FUNCTION: Serine/threonine-protein kinase that acts downstream of ERK (MAPK1/ERK2 and MAPK3/ERK1) signaling and mediates mitogenic and stress-induced activation of transcription factors, regulates translation, and mediates cellular proliferation, survival, and differentiation. May function as tumor suppressor in epithelial ovarian cancer cells.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Upon extracellular signal or mitogen stimulation, phosphorylated at Thr-570 in the C-terminal kinase domain (CTKD) by MAPK1/ERK2 and MAPK3/ERK1. The activated CTKD then autophosphorylates Ser-377, allowing binding of PDPK1, which in turn phosphorylates Ser-218 in the N-terminal kinase domain (NTDK) leading to the full activation of the protein and subsequent phosphorylation of the substrates by the NTKD.
SUBUNIT: Forms a complex with either MAPK1/ERK2 or MAPK3/ERK1 in quiescent cells. Transiently dissociates following mitogenic stimulation (By similarity).
SUBCELLULAR LOCATION: Nucleus. Cytoplasm.
TISSUE SPECIFICITY: Widely expressed with higher expression in lung, skeletal muscle, brain, uterus, ovary, thyroid and prostate.
PTM: Activated by phosphorylation at Ser-218 by PDPK1. Autophosphorylated on Ser-377, as part of the activation process. May be phosphorylated at Thr-356 and Ser-360 by MAPK1/ERK2 and MAPK3/ERK1 (By similarity).
PTM: N-terminal myristoylation results in an activated kinase in the absence of added growth factors (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 2 protein kinase domains.
SEQUENCE CAUTION: Sequence=AAC82496.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAD92353.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAG53121.1; Type=Frameshift; Positions=527;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.43 RPKM in Cells - Cultured fibroblasts
Total median expression: 646.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -134.60232-0.580 Picture PostScript Text
3' UTR -1191.473398-0.351 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR016239 - Ribosomal_S6_kinase_II
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00433 - Protein kinase C terminal domain
PF03109 - ABC1 atypical kinase-like domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
47576 - Calponin-homology domain, CH-domain
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q15349
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004712 protein serine/threonine/tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0008285 negative regulation of cell proliferation
GO:0016310 phosphorylation
GO:0035556 intracellular signal transduction
GO:0043065 positive regulation of apoptotic process
GO:0045786 negative regulation of cell cycle

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB209116 - Homo sapiens mRNA for ribosomal protein S6 kinase, 90kDa, polypeptide 2 isoform b variant protein.
BC002363 - Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 2, mRNA (cDNA clone MGC:8629 IMAGE:2961482), complete cds.
AK095751 - Homo sapiens cDNA FLJ38432 fis, clone FEBRA2014417, highly similar to Ribosomal protein S6 kinase alpha-2 (EC 2.7.11.1).
X85106 - H.sapiens mRNA for ribosomal S6 kinase.
AK310428 - Homo sapiens cDNA, FLJ17470.
AK295674 - Homo sapiens cDNA FLJ55331 complete cds, highly similar to Ribosomal protein S6 kinase alpha-2 (EC 2.7.11.1).
DQ891864 - Synthetic construct clone IMAGE:100004494; FLH180714.01X; RZPDo839F03134D ribosomal protein S6 kinase, 90kDa, polypeptide 2 (RPS6KA2) gene, encodes complete protein.
DQ895053 - Synthetic construct Homo sapiens clone IMAGE:100009513; FLH180710.01L; RZPDo839F03133D ribosomal protein S6 kinase, 90kDa, polypeptide 2 (RPS6KA2) gene, encodes complete protein.
KJ534936 - Homo sapiens clone RPS6KA2_iso-C_adult-A14 ribosomal protein S6 kinase 90kDa polypeptide 2 isoform C (RPS6KA2) mRNA, partial cds, alternatively spliced.
KJ535080 - Homo sapiens clone RPS6KA2_iso-B_fetal-F01 ribosomal protein S6 kinase 90kDa polypeptide 2 isoform B (RPS6KA2) mRNA, complete cds, alternatively spliced.
KJ535087 - Homo sapiens clone RPS6KA2_iso-A_adult-A02 ribosomal protein S6 kinase 90kDa polypeptide 2 isoform A (RPS6KA2) mRNA, complete cds, alternatively spliced.
AB384854 - Synthetic construct DNA, clone: pF1KB3783, Homo sapiens RPS6KA2 gene for ribosomal protein S6 kinase alpha-2, complete cds, without stop codon, in Flexi system.
L07598 - Homo sapiens ribosomal protein S6 kinase 2 (RPS6KA2) mRNA, partial cds.
AF140710 - Homo sapiens T complex responder 2 mRNA sequence.
BC011189 - Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 2, mRNA (cDNA clone IMAGE:4151609).
AB073884 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla00832, full insert sequence.
AK027727 - Homo sapiens cDNA FLJ14821 fis, clone OVARC1000556, highly similar to RIBOSOMAL PROTEIN S6 KINASE II ALPHA 2 (EC 2.7.1.-).
JD549775 - Sequence 530799 from Patent EP1572962.
JD191408 - Sequence 172432 from Patent EP1572962.
JD248765 - Sequence 229789 from Patent EP1572962.
JD500358 - Sequence 481382 from Patent EP1572962.
JD188386 - Sequence 169410 from Patent EP1572962.
JD244674 - Sequence 225698 from Patent EP1572962.
JD142970 - Sequence 123994 from Patent EP1572962.
JD225048 - Sequence 206072 from Patent EP1572962.
JD210164 - Sequence 191188 from Patent EP1572962.
JD190578 - Sequence 171602 from Patent EP1572962.
JD402660 - Sequence 383684 from Patent EP1572962.
JD153488 - Sequence 134512 from Patent EP1572962.
JD440241 - Sequence 421265 from Patent EP1572962.
JD291088 - Sequence 272112 from Patent EP1572962.
JD290224 - Sequence 271248 from Patent EP1572962.
JD209049 - Sequence 190073 from Patent EP1572962.
JD256370 - Sequence 237394 from Patent EP1572962.
JD220246 - Sequence 201270 from Patent EP1572962.
JD485826 - Sequence 466850 from Patent EP1572962.
JD077578 - Sequence 58602 from Patent EP1572962.
JD170628 - Sequence 151652 from Patent EP1572962.
JD453164 - Sequence 434188 from Patent EP1572962.
JD158659 - Sequence 139683 from Patent EP1572962.
AK307470 - Homo sapiens cDNA, FLJ97418.
JD336017 - Sequence 317041 from Patent EP1572962.
JD537919 - Sequence 518943 from Patent EP1572962.
JD190331 - Sequence 171355 from Patent EP1572962.
JD485221 - Sequence 466245 from Patent EP1572962.
JD104545 - Sequence 85569 from Patent EP1572962.
JD566567 - Sequence 547591 from Patent EP1572962.
JD263177 - Sequence 244201 from Patent EP1572962.
JD215139 - Sequence 196163 from Patent EP1572962.
DQ585489 - Homo sapiens piRNA piR-52601, complete sequence.
JD399940 - Sequence 380964 from Patent EP1572962.
JD203400 - Sequence 184424 from Patent EP1572962.
JD204520 - Sequence 185544 from Patent EP1572962.
JD141511 - Sequence 122535 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q15349 (Reactome details) participates in the following event(s):

R-HSA-198746 ERK1/2/5 activate RSK1/2/3
R-HSA-444253 Phosphorylation by MAPK/ERK
R-HSA-374696 Phosphorylation of L1 by p90rsk
R-HSA-442739 Phosphorylation by PDK1
R-HSA-199895 RSK1/2/3 phosphorylates CREB at Serine 133
R-HSA-3857328 RPS6KA1/2/3 phosphorylates CEBPB on S321
R-HSA-442724 Phosphorylation of CREB by ribosomal protein S6 kinase
R-HSA-198753 ERK/MAPK targets
R-HSA-881907 Gastrin-CREB signalling pathway via PKC and MAPK
R-HSA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-HSA-444257 RSK activation
R-HSA-437239 Recycling pathway of L1
R-HSA-198725 Nuclear Events (kinase and transcription factor activation)
R-HSA-450282 MAPK targets/ Nuclear events mediated by MAP kinases
R-HSA-416476 G alpha (q) signalling events
R-HSA-2559583 Cellular Senescence
R-HSA-199920 CREB phosphorylation
R-HSA-442742 CREB phosphorylation through the activation of Ras
R-HSA-373760 L1CAM interactions
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-450294 MAP kinase activation
R-HSA-388396 GPCR downstream signalling
R-HSA-2262752 Cellular responses to stress
R-HSA-438064 Post NMDA receptor activation events
R-HSA-422475 Axon guidance
R-HSA-166520 Signaling by NTRKs
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-372790 Signaling by GPCR
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-442755 Activation of NMDA receptor and postsynaptic events
R-HSA-1266738 Developmental Biology
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-162582 Signal Transduction
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168249 Innate Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-168256 Immune System
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: B3KTK9, ENST00000265678.1, ENST00000265678.2, ENST00000265678.3, ENST00000265678.4, ENST00000265678.5, ENST00000265678.6, ENST00000265678.7, ENST00000265678.8, KS6A2_HUMAN, MAPKAPK1C, NM_021135, Q15349, Q15419, Q59GJ3, Q5TI68, Q96J38, Q9UJN5, RSK3, uc317idf.1, uc317idf.2
UCSC ID: ENST00000265678.9_11
RefSeq Accession: NM_021135.6
Protein: Q15349 (aka KS6A2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.