Human Gene RPS6KA1 (ENST00000374168.7_7) from GENCODE V47lift37
  Description: ribosomal protein S6 kinase A1, transcript variant 1 (from RefSeq NM_002953.4)
Gencode Transcript: ENST00000374168.7_7
Gencode Gene: ENSG00000117676.14_12
Transcript (Including UTRs)
   Position: hg19 chr1:26,856,252-26,901,516 Size: 45,265 Total Exon Count: 22 Strand: +
Coding Region
   Position: hg19 chr1:26,856,412-26,900,692 Size: 44,281 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:26,856,252-26,901,516)mRNA (may differ from genome)Protein (735 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KS6A1_HUMAN
DESCRIPTION: RecName: Full=Ribosomal protein S6 kinase alpha-1; Short=S6K-alpha-1; EC=2.7.11.1; AltName: Full=90 kDa ribosomal protein S6 kinase 1; Short=p90-RSK 1; Short=p90RSK1; Short=p90S6K; AltName: Full=MAP kinase-activated protein kinase 1a; Short=MAPK-activated protein kinase 1a; Short=MAPKAP kinase 1a; Short=MAPKAPK-1a; AltName: Full=Ribosomal S6 kinase 1; Short=RSK-1;
FUNCTION: Serine/threonine-protein kinase that acts downstream of ERK (MAPK1/ERK2 and MAPK3/ERK1) signaling and mediates mitogenic and stress-induced activation of the transcription factors CREB1, ETV1/ER81 and NR4A1/NUR77, regulates translation through RPS6 and EIF4B phosphorylation, and mediates cellular proliferation, survival, and differentiation by modulating mTOR signaling and repressing pro-apoptotic function of BAD and DAPK1. In fibroblast, is required for EGF-stimulated phosphorylation of CREB1, which results in the subsequent transcriptional activation of several immediate-early genes. In response to mitogenic stimulation (EGF and PMA), phosphorylates and activates NR4A1/NUR77 and ETV1/ER81 transcription factors and the cofactor CREBBP. Upon insulin- derived signal, acts indirectly on the transcription regulation of several genes by phosphorylating GSK3B at 'Ser-9' and inhibiting its activity. Phosphorylates RPS6 in response to serum or EGF via an mTOR-independent mechanism and promotes translation initiation by facilitating assembly of the preinitiation complex. In response to insulin, phosphorylates EIF4B, enhancing EIF4B affinity for the EIF3 complex and stimulating cap-dependent translation. Is involved in the mTOR nutrient-sensing pathway by directly phosphorylating TSC2 at 'Ser-1798', which potently inhibits TSC2 ability to suppress mTOR signaling, and mediates phosphorylation of RPTOR, which regulates mTORC1 activity and may promote rapamycin-sensitive signaling independently of the PI3K/AKT pathway. Mediates cell survival by phosphorylating the pro- apoptotic proteins BAD and DAPK1 and suppressing their pro- apoptotic function. Promotes the survival of hepatic stellate cells by phosphorylating CEBPB in response to the hepatotoxin carbon tetrachloride (CCl4). Is involved in cell cycle regulation by phosphorylating the CDK inhibitor CDKN1B, which promotes CDKN1B association with 14-3-3 proteins and prevents its translocation to the nucleus and inhibition of G1 progression.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Upon extracellular signal or mitogen stimulation, phosphorylated at Thr-573 in the C-terminal kinase domain (CTKD) by MAPK1/ERK2 and MAPK3/ERK1. The activated CTKD then autophosphorylates Ser-380, allowing binding of PDPK1, which in turn phosphorylates Ser-221 in the N-terminal kinase domain (NTDK) leading to the full activation of the protein and subsequent phosphorylation of the substrates by the NTKD.
SUBUNIT: Forms a complex with either MAPK1/ERK2 or MAPK3/ERK1 in quiescent cells. Transiently dissociates following mitogenic stimulation. Interacts with ETV1/ER81 and FGFR1.
INTERACTION: P50552:VASP; NbExp=4; IntAct=EBI-963034, EBI-748201;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm.
PTM: Activated by phosphorylation at Ser-221 by PDPK1. Autophosphorylated on Ser-380, as part of the activation process. May be phosphorylated at Thr-359 and Ser-363 by MAPK1/ERK2 and MAPK3/ERK1.
PTM: N-terminal myristoylation results in an activated kinase in the absence of added growth factors.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 2 protein kinase domains.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/RPS6KA1ID43477ch1p36.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RPS6KA1
Diseases sorted by gene-association score: coffin-lowry syndrome (12), tuberous sclerosis (8), adrenal cortical adenocarcinoma (8), hemorrhoid (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 92.96 RPKM in Whole Blood
Total median expression: 533.25 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -84.40160-0.528 Picture PostScript Text
3' UTR -317.40824-0.385 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR016239 - Ribosomal_S6_kinase_II
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00433 - Protein kinase C terminal domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2WNT - X-ray 2Z7Q - X-ray MuPIT 2Z7R - X-ray MuPIT 2Z7S - X-ray MuPIT 3RNY - X-ray MuPIT 3TEI - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q15418
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004712 protein serine/threonine/tyrosine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0016310 phosphorylation
GO:0030307 positive regulation of cell growth
GO:0035556 intracellular signal transduction
GO:0043066 negative regulation of apoptotic process
GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043555 regulation of translation in response to stress
GO:0043620 regulation of DNA-templated transcription in response to stress
GO:0045597 positive regulation of cell differentiation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0072574 hepatocyte proliferation
GO:2000491 positive regulation of hepatic stellate cell activation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK225672 - Homo sapiens mRNA for ribosomal protein S6 kinase, 90kDa, polypeptide 1 isoform a variant, clone: STM07387.
BC014966 - Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 1, mRNA (cDNA clone MGC:23062 IMAGE:4867373), complete cds.
AK315730 - Homo sapiens cDNA, FLJ96835, Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 1(RPS6KA1), mRNA.
L07597 - Homo sapiens ribosomal protein S6 kinase 1 (RPS6KA1) mRNA, complete cds.
AB385042 - Synthetic construct DNA, clone: pF1KB5107, Homo sapiens RPS6KA1 gene for ribosomal protein S6 kinase alpha-1, complete cds, without stop codon, in Flexi system.
DQ892242 - Synthetic construct clone IMAGE:100004872; FLH184445.01X; RZPDo839G01144D ribosomal protein S6 kinase, 90kDa, polypeptide 1 (RPS6KA1) gene, encodes complete protein.
DQ895443 - Synthetic construct Homo sapiens clone IMAGE:100009903; FLH184441.01L; RZPDo839G01143D ribosomal protein S6 kinase, 90kDa, polypeptide 1 (RPS6KA1) gene, encodes complete protein.
KJ897502 - Synthetic construct Homo sapiens clone ccsbBroadEn_06896 RPS6KA1 gene, encodes complete protein.
KJ905309 - Synthetic construct Homo sapiens clone ccsbBroadEn_14830 RPS6KA1 gene, encodes complete protein.
AK299007 - Homo sapiens cDNA FLJ54535 complete cds, highly similar to Ribosomal protein S6 kinase alpha-1 (EC 2.7.11.1).
AK294818 - Homo sapiens cDNA FLJ53289 complete cds, highly similar to Ribosomal protein S6 kinase alpha-1 (EC 2.7.11.1).
AK092955 - Homo sapiens cDNA FLJ35636 fis, clone SPLEN2011820, highly similar to RIBOSOMAL PROTEIN S6 KINASE II ALPHA 1 (EC 2.7.1.-).
AK292722 - Homo sapiens cDNA FLJ76963 complete cds, highly similar to Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 1 (RPS6KA1), transcript variant 2, mRNA.
DL491958 - Novel nucleic acids.
DL490515 - Novel nucleic acids.
BC039069 - Homo sapiens ribosomal protein S6 kinase, 90kDa, polypeptide 1, mRNA (cDNA clone IMAGE:5180915), with apparent retained intron.
JD343135 - Sequence 324159 from Patent EP1572962.
JD407702 - Sequence 388726 from Patent EP1572962.
JD538131 - Sequence 519155 from Patent EP1572962.
JD118418 - Sequence 99442 from Patent EP1572962.
JD180448 - Sequence 161472 from Patent EP1572962.
JD085807 - Sequence 66831 from Patent EP1572962.
JD189565 - Sequence 170589 from Patent EP1572962.
JD376943 - Sequence 357967 from Patent EP1572962.
JD520862 - Sequence 501886 from Patent EP1572962.
JD196940 - Sequence 177964 from Patent EP1572962.
JD385259 - Sequence 366283 from Patent EP1572962.
JD392899 - Sequence 373923 from Patent EP1572962.
JD466402 - Sequence 447426 from Patent EP1572962.
JD190669 - Sequence 171693 from Patent EP1572962.
JD286127 - Sequence 267151 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_ghPathway - Growth Hormone Signaling Pathway
h_igf1rPathway - Multiple antiapoptotic pathways from IGF-1R signaling lead to BAD phosphorylation
h_mPRPathway - How Progesterone Initiates the Oocyte Maturation
h_badPathway - Regulation of BAD phosphorylation
h_erkPathway - Erk1/Erk2 Mapk Signaling pathway
h_melanocytepathway - Melanocyte Development and Pigmentation Pathway
h_erk5Pathway - Role of Erk5 in Neuronal Survival
h_mapkPathway - MAPKinase Signaling Pathway
h_crebPathway - Transcription factor CREB and its extracellular signals
h_g2Pathway - Cell Cycle: G2/M Checkpoint

Reactome (by CSHL, EBI, and GO)

Protein Q15418 (Reactome details) participates in the following event(s):

R-HSA-198746 ERK1/2/5 activate RSK1/2/3
R-HSA-442739 Phosphorylation by PDK1
R-HSA-444253 Phosphorylation by MAPK/ERK
R-HSA-374696 Phosphorylation of L1 by p90rsk
R-HSA-199895 RSK1/2/3 phosphorylates CREB at Serine 133
R-HSA-3857328 RPS6KA1/2/3 phosphorylates CEBPB on S321
R-NUL-3876071 RPS6KA1/2/3 phosphorylates Cebpb on S273
R-HSA-442724 Phosphorylation of CREB by ribosomal protein S6 kinase
R-HSA-198753 ERK/MAPK targets
R-HSA-881907 Gastrin-CREB signalling pathway via PKC and MAPK
R-HSA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-HSA-444257 RSK activation
R-HSA-437239 Recycling pathway of L1
R-HSA-198725 Nuclear Events (kinase and transcription factor activation)
R-HSA-450282 MAPK targets/ Nuclear events mediated by MAP kinases
R-HSA-416476 G alpha (q) signalling events
R-HSA-2559583 Cellular Senescence
R-HSA-199920 CREB phosphorylation
R-HSA-442742 CREB phosphorylation through the activation of Ras
R-HSA-373760 L1CAM interactions
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-450294 MAP kinase activation
R-HSA-388396 GPCR downstream signalling
R-HSA-2262752 Cellular responses to stress
R-HSA-438064 Post NMDA receptor activation events
R-HSA-422475 Axon guidance
R-HSA-166520 Signaling by NTRKs
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-372790 Signaling by GPCR
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-442755 Activation of NMDA receptor and postsynaptic events
R-HSA-1266738 Developmental Biology
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-162582 Signal Transduction
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168249 Innate Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-168256 Immune System
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: A6NGG4, A8K9K7, B2RDY8, B7Z5J0, E9PRI4, ENST00000374168.1, ENST00000374168.2, ENST00000374168.3, ENST00000374168.4, ENST00000374168.5, ENST00000374168.6, KS6A1_HUMAN, MAPKAPK1A, NM_002953, Q15418, Q5SVM5, Q5SVM8, Q5SVM9, Q96C05, Q9BQK2, RSK1, uc318liy.1, uc318liy.2
UCSC ID: ENST00000374168.7_7
RefSeq Accession: NM_002953.4
Protein: Q15418 (aka KS6A1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.