Human Gene RPP30 (ENST00000371703.8_4) from GENCODE V47lift37
  Description: ribonuclease P/MRP subunit p30, transcript variant 2 (from RefSeq NM_006413.5)
Gencode Transcript: ENST00000371703.8_4
Gencode Gene: ENSG00000148688.14_6
Transcript (Including UTRs)
   Position: hg19 chr10:92,631,731-92,661,948 Size: 30,218 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr10:92,631,744-92,660,436 Size: 28,693 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:92,631,731-92,661,948)mRNA (may differ from genome)Protein (268 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RPP30_HUMAN
DESCRIPTION: RecName: Full=Ribonuclease P protein subunit p30; Short=RNaseP protein p30; EC=3.1.26.5; AltName: Full=RNase P subunit 2;
FUNCTION: Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
CATALYTIC ACTIVITY: Endonucleolytic cleavage of RNA, removing 5'- extranucleotides from tRNA precursor.
SUBUNIT: RNase P consists of a RNA moiety and at least 8 protein subunits; POP1, RPP14, RPP20/POP7, RPP25, RPP29/POP4, RPP30, RPP38 and RPP40.
SUBCELLULAR LOCATION: Nucleus, nucleolus (Potential).
MISCELLANEOUS: Autoantibodies against RPP30 are found in sera from scleroderma patients.
SIMILARITY: Belongs to the eukaryotic/archaeal RNase P protein component 3 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RPP30
Diseases sorted by gene-association score: omenn syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.32 RPKM in Testis
Total median expression: 167.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -406.101512-0.269 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016195 - Pol/histidinol_Pase-like
IPR002738 - RNase_P_p30

Pfam Domains:
PF01876 - RNase P subunit p30

SCOP Domains:
89550 - PHP domain-like

ModBase Predicted Comparative 3D Structure on P78346
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGD  WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0003824 catalytic activity
GO:0004526 ribonuclease P activity
GO:0004540 ribonuclease activity
GO:0005515 protein binding
GO:0016787 hydrolase activity

Biological Process:
GO:0001682 tRNA 5'-leader removal
GO:0008033 tRNA processing
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic

Cellular Component:
GO:0000172 ribonuclease MRP complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005655 nucleolar ribonuclease P complex
GO:0005730 nucleolus
GO:0030681 multimeric ribonuclease P complex


-  Descriptions from all associated GenBank mRNAs
  BC006991 - Homo sapiens ribonuclease P/MRP 30kDa subunit, mRNA (cDNA clone MGC:12256 IMAGE:3827681), complete cds.
AL833628 - Homo sapiens mRNA; cDNA DKFZp686C1579 (from clone DKFZp686C1579).
AK296196 - Homo sapiens cDNA FLJ57382 complete cds, highly similar to Ribonuclease P protein subunit p30 (EC 3.1.26.5).
U77665 - Human RNaseP protein p30 (RPP30) mRNA, complete cds.
AK312900 - Homo sapiens cDNA, FLJ93346, Homo sapiens ribonuclease P (30kD) (RPP30), mRNA.
AK225532 - Homo sapiens mRNA for ribonuclease P variant, clone: KAT10347.
KJ893074 - Synthetic construct Homo sapiens clone ccsbBroadEn_02468 RPP30 gene, encodes complete protein.
DQ893181 - Synthetic construct clone IMAGE:100005811; FLH194795.01X; RZPDo839F0280D ribonuclease P/MRP 30kDa subunit (RPP30) gene, encodes complete protein.
DQ896488 - Synthetic construct Homo sapiens clone IMAGE:100010948; FLH194791.01L; RZPDo839F0270D ribonuclease P/MRP 30kDa subunit (RPP30) gene, encodes complete protein.
JD380447 - Sequence 361471 from Patent EP1572962.
JD434865 - Sequence 415889 from Patent EP1572962.
JD362795 - Sequence 343819 from Patent EP1572962.
JD394151 - Sequence 375175 from Patent EP1572962.
JD299100 - Sequence 280124 from Patent EP1572962.
JD263022 - Sequence 244046 from Patent EP1572962.
JD432945 - Sequence 413969 from Patent EP1572962.
JD275350 - Sequence 256374 from Patent EP1572962.
JD351071 - Sequence 332095 from Patent EP1572962.
JD513021 - Sequence 494045 from Patent EP1572962.
JD098372 - Sequence 79396 from Patent EP1572962.
JD317659 - Sequence 298683 from Patent EP1572962.
JD371248 - Sequence 352272 from Patent EP1572962.
JD337531 - Sequence 318555 from Patent EP1572962.
JD367488 - Sequence 348512 from Patent EP1572962.
JD268824 - Sequence 249848 from Patent EP1572962.
JD255823 - Sequence 236847 from Patent EP1572962.
JD425923 - Sequence 406947 from Patent EP1572962.
JD512078 - Sequence 493102 from Patent EP1572962.
JD267529 - Sequence 248553 from Patent EP1572962.
JD448026 - Sequence 429050 from Patent EP1572962.
JD403484 - Sequence 384508 from Patent EP1572962.
JD052915 - Sequence 33939 from Patent EP1572962.
JD445262 - Sequence 426286 from Patent EP1572962.
JD477001 - Sequence 458025 from Patent EP1572962.
JD150118 - Sequence 131142 from Patent EP1572962.
JD410339 - Sequence 391363 from Patent EP1572962.
JD346660 - Sequence 327684 from Patent EP1572962.
JD356734 - Sequence 337758 from Patent EP1572962.
JD530765 - Sequence 511789 from Patent EP1572962.
JD299264 - Sequence 280288 from Patent EP1572962.
JD509488 - Sequence 490512 from Patent EP1572962.
JD359131 - Sequence 340155 from Patent EP1572962.
JD241335 - Sequence 222359 from Patent EP1572962.
JD284801 - Sequence 265825 from Patent EP1572962.
JD541124 - Sequence 522148 from Patent EP1572962.
JD236971 - Sequence 217995 from Patent EP1572962.
JD095766 - Sequence 76790 from Patent EP1572962.
JD119352 - Sequence 100376 from Patent EP1572962.
JD254719 - Sequence 235743 from Patent EP1572962.
JD264629 - Sequence 245653 from Patent EP1572962.
JD312063 - Sequence 293087 from Patent EP1572962.
JD346554 - Sequence 327578 from Patent EP1572962.
JD356495 - Sequence 337519 from Patent EP1572962.
JD318254 - Sequence 299278 from Patent EP1572962.
JD409692 - Sequence 390716 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P78346 (Reactome details) participates in the following event(s):

R-HSA-5696810 RNase P cleaves the 5' end of pre-tRNA
R-HSA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-HSA-6784531 tRNA processing in the nucleus
R-HSA-8868773 rRNA processing in the nucleus and cytosol
R-HSA-72306 tRNA processing
R-HSA-72312 rRNA processing
R-HSA-8953854 Metabolism of RNA

-  Other Names for This Gene
  Alternate Gene Symbols: B2R799, E9PB02, ENST00000371703.1, ENST00000371703.2, ENST00000371703.3, ENST00000371703.4, ENST00000371703.5, ENST00000371703.6, ENST00000371703.7, NM_006413, P78346, RNASEP2, RPP30_HUMAN, uc318jii.1, uc318jii.2
UCSC ID: ENST00000371703.8_4
RefSeq Accession: NM_006413.5
Protein: P78346 (aka RPP30_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.