Human Gene RNASE12 (ENST00000556526.1_6) from GENCODE V47lift37
  Description: Belongs to the pancreatic ribonuclease family. (from UniProt W0UV30)
Gencode Transcript: ENST00000556526.1_6
Gencode Gene: ENSG00000258436.2_9
Transcript (Including UTRs)
   Position: hg19 chr14:21,058,352-21,058,982 Size: 631 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr14:21,058,439-21,058,882 Size: 444 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersGene AllelesRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:21,058,352-21,058,982)mRNA (may differ from genome)Protein (147 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
EnsemblEntrez GeneExonPrimerGeneCardsHGNCMGI
PubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.20100-0.202 Picture PostScript Text
3' UTR -25.2087-0.290 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  BX161458 - human full-length cDNA clone CS0DI054YM13 of Placenta of Homo sapiens (human).
AY358794 - Homo sapiens clone DNA149893 C14orf6 (UNQ5832) mRNA, complete cds.
BC130347 - Homo sapiens ribonuclease, RNase A family, 12 (non-active), mRNA (cDNA clone MGC:163219 IMAGE:40146378), complete cds.
BC130349 - Homo sapiens ribonuclease, RNase A family, 12 (non-active), mRNA (cDNA clone MGC:163221 IMAGE:40146380), complete cds.
FJ237362 - Homo sapiens epididymis secretory sperm binding protein Li 85p (HEL-S-85p) mRNA, complete cds.
AY665807 - Homo sapiens ribonuclease 12 (RNASE12) mRNA, complete cds.
HQ258082 - Synthetic construct Homo sapiens clone IMAGE:100072391 ribonuclease, RNase A family, 12 (non-active) (RNASE12) gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: HEL-S-85p , NM_001024822, RAI1 , uc325iuc.1, W0UV30, W0UV30_HUMAN
UCSC ID: ENST00000556526.1_6
RefSeq Accession: NM_000014.6

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.