Human Gene RGS20 (ENST00000276500.5_8) from GENCODE V47lift37
  Description: Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)- i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins (By similarity). (from UniProt O76081)
Gencode Transcript: ENST00000276500.5_8
Gencode Gene: ENSG00000147509.14_13
Transcript (Including UTRs)
   Position: hg19 chr8:54,793,432-54,871,863 Size: 78,432 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr8:54,793,576-54,871,018 Size: 77,443 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:54,793,432-54,871,863)mRNA (may differ from genome)Protein (241 aa)
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-  Comments and Description Text from UniProtKB
  ID: RGS20_HUMAN
DESCRIPTION: RecName: Full=Regulator of G-protein signaling 20; Short=RGS20; AltName: Full=Gz-selective GTPase-activating protein; Short=G(z)GAP; Short=Gz-GAP; AltName: Full=Regulator of G-protein signaling Z1; AltName: Full=Regulator of Gz-selective protein signaling 1;
FUNCTION: Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G- protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins (By similarity).
SUBUNIT: Forms a complex with G(alpha)z/i2 subunits and mu-opioid receptors; the formation of this complex results in mu-opioid receptor desensitization. Interacts with OPRM1 (By similarity).
SUBCELLULAR LOCATION: Membrane; Lipid-anchor. Nucleus. Cytoplasm. Note=Shuttles between the cytoplasm/cell membrane and the nucleus (By similarity). Anchored to the membrane through palmitoylation (By similarity).
TISSUE SPECIFICITY: Isoform 5 is expressed in brain at high levels in the caudate nucleus and temporal lobe.
PTM: Fatty acylated. Heavily palmitoylated in the cysteine string motif (By similarity).
PTM: N- and O-glycosylated in synapsomal membranes (By similarity).
PTM: Serine phosphorylated in synapsomal membranes (By similarity).
PTM: Sumoylated with SUMO1 and SUMO2 in synaptosomes. The sumoylated forms act as a scaffold for sequestering mu-opioid receptor-activated G(alpha) subunits (By similarity).
SIMILARITY: Contains 1 RGS domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.76 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 85.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.40144-0.267 Picture PostScript Text
3' UTR -199.80845-0.236 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000342 - Regulat_G_prot_signal
IPR024066 - Regulat_G_prot_signal_dom1
IPR016137 - Regulat_G_prot_signal_superfam

Pfam Domains:
PF00615 - Regulator of G protein signaling domain

SCOP Domains:
48097 - Regulator of G-protein signaling, RGS

ModBase Predicted Comparative 3D Structure on O76081
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding

Biological Process:
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0009968 negative regulation of signal transduction
GO:0043547 positive regulation of GTPase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005802 trans-Golgi network
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0031410 cytoplasmic vesicle


-  Descriptions from all associated GenBank mRNAs
  AY046538 - Homo sapiens retina specific regulator of G-protein signaling splice variant 6 (RGS20) mRNA, complete cds.
AF366054 - Homo sapiens RGS20 ret splice variant 1 mRNA, complete cds, alternatively spliced.
AF366055 - Homo sapiens RGS20 ret splice variant 2 mRNA, complete cds, alternatively spliced.
AF366056 - Homo sapiens RGS20 ret splice variant 3 mRNA, complete cds, alternatively spliced.
AF366057 - Homo sapiens RGS20 ret splice variant 4 mRNA, complete cds, alternatively spliced.
AK094503 - Homo sapiens cDNA FLJ37184 fis, clone BRALZ2001559, highly similar to Regulator of G-protein signaling 20.
BC063490 - Homo sapiens regulator of G-protein signaling 20, mRNA (cDNA clone MGC:74877 IMAGE:5240001), complete cds.
BC054867 - Homo sapiens cDNA clone IMAGE:6494911, partial cds.
BC018618 - Homo sapiens regulator of G-protein signaling 20, mRNA (cDNA clone IMAGE:4552107), with apparent retained intron.
BC031328 - Homo sapiens regulator of G-protein signaling 20, mRNA (cDNA clone IMAGE:3604356), with apparent retained intron.
AF060877 - Homo sapiens Gz-selective GTPase-activating protein (RGS20) mRNA, complete cds.
HQ257937 - Synthetic construct Homo sapiens clone IMAGE:100072246 regulator of G-protein signaling 20 (RGS20), transcript variant 2 (RGS20) gene, encodes complete protein.
KJ892571 - Synthetic construct Homo sapiens clone ccsbBroadEn_01965 RGS20 gene, encodes complete protein.
JQ308180 - Homo sapiens regulator of G-protein signaling 20 variant 2 mRNA, complete cds.
BC015614 - Homo sapiens regulator of G-protein signaling 20, mRNA (cDNA clone IMAGE:4840464), partial cds.
CU677365 - Synthetic construct Homo sapiens gateway clone IMAGE:100017609 5' read RGS20 mRNA.
KJ901888 - Synthetic construct Homo sapiens clone ccsbBroadEn_11282 RGS20 gene, encodes complete protein.
AF493940 - Homo sapiens regulator of G protein signalling 20 (RGS20) mRNA, complete cds.
AF074979 - Homo sapiens regulator of G protein signaling-Z (RGSZ1) mRNA, complete cds.
JD288525 - Sequence 269549 from Patent EP1572962.
JD492800 - Sequence 473824 from Patent EP1572962.
JD326989 - Sequence 308013 from Patent EP1572962.
JD540175 - Sequence 521199 from Patent EP1572962.
JD279452 - Sequence 260476 from Patent EP1572962.
JD313822 - Sequence 294846 from Patent EP1572962.
JD346925 - Sequence 327949 from Patent EP1572962.
JD232733 - Sequence 213757 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000276500.1, ENST00000276500.2, ENST00000276500.3, ENST00000276500.4, NM_003702, O76081, Q96BG9, RGS20_HUMAN, RGSZ1, uc317jkp.1, uc317jkp.2, ZGAP1
UCSC ID: ENST00000276500.5_8
Representative RNA: NM_003702
Protein: O76081 (aka RGS20_HUMAN or RGSK_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.