Human Gene QDPR (ENST00000281243.10_7) from GENCODE V47lift37
  Description: quinoid dihydropteridine reductase, transcript variant 1 (from RefSeq NM_000320.3)
Gencode Transcript: ENST00000281243.10_7
Gencode Gene: ENSG00000151552.13_10
Transcript (Including UTRs)
   Position: hg19 chr4:17,488,018-17,513,713 Size: 25,696 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr4:17,488,754-17,513,677 Size: 24,924 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:17,488,018-17,513,713)mRNA (may differ from genome)Protein (244 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DHPR_HUMAN
DESCRIPTION: RecName: Full=Dihydropteridine reductase; EC=1.5.1.34; AltName: Full=HDHPR; AltName: Full=Quinoid dihydropteridine reductase;
FUNCTION: The product of this enzyme, tetrahydrobiopterin (BH-4), is an essential cofactor for phenylalanine, tyrosine, and tryptophan hydroxylases.
CATALYTIC ACTIVITY: A 5,6,7,8-tetrahydropteridine + NAD(P)(+) = a 6,7-dihydropteridine + NAD(P)H.
SUBUNIT: Homodimer.
DISEASE: Defects in QDPR are the cause of BH4-deficient hyperphenylalaninemia type C (HPABH4C) [MIM:261630]; also called dihydropteridine reductase deficiency (DHPR deficiency) or hyperphenylalaninemia tetrahydrobiopterin-deficient due to DHPR deficiency or quinoid dihydropteridine reductase deficiency (QDPR deficiency). HPABH4C is a rare autosomal recessive disorder characterized by hyperphenylalaninemia and severe neurologic symptoms (malignant hyperphenylalaninemia) including axial hypotonia and truncal hypertonia, abnormal thermogenesis, and microcephaly. These signs are attributable to depletion of the neurotransmitters dopamine and serotonin, whose syntheses are controlled by tryptophan and tyrosine hydroxylases that use BH-4 as cofactor. These patients do not respond to phenylalanine- restricted diet. HPABH4C is lethal if untreated.
SIMILARITY: Belongs to the short-chain dehydrogenases/reductases (SDR) family.
WEB RESOURCE: Name=BIOMDB; Note=Db of mutations causing tetrahydrobiopterin deficiencies; URL="http://www.bh4.org/biodef1.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/QDPR";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: QDPR
Diseases sorted by gene-association score: hyperphenylalaninemia, bh4-deficient, c* (1681), phenylketonuria (40), hyperphenylalaninemia (23), hypertonia (18), malignant hyperthermia (15), hyperphenylalaninemia, bh4-deficient, b (15), classic phenylketonuria (14), hypokalemic periodic paralysis, type 2 (13), mild hyperphenylalaninemia (10), tetrahydrobiopterin deficiency (9), native american myopathy (9), central core disease (9), hypokalemic periodic paralysis, type 1 (9), cerebral folate deficiency (8), histidinemia (7), histidine metabolism disease (7), keratomalacia (7), myopathy, tubular aggregate, 1 (6), familial periodic paralysis (6), kearns-sayre syndrome (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 214.94 RPKM in Brain - Substantia nigra
Total median expression: 1780.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.2036-0.283 Picture PostScript Text
3' UTR -190.50736-0.259 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002198 - DH_sc/Rdtase_SDR
IPR016040 - NAD(P)-bd_dom
IPR020904 - Sc_DH/Rdtase_CS

Pfam Domains:
PF00106 - short chain dehydrogenase

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1HDR - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P09417
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004155 6,7-dihydropteridine reductase activity
GO:0009055 electron carrier activity
GO:0016491 oxidoreductase activity
GO:0042803 protein homodimerization activity
GO:0070402 NADPH binding
GO:0070404 NADH binding

Biological Process:
GO:0001889 liver development
GO:0006520 cellular amino acid metabolic process
GO:0006559 L-phenylalanine catabolic process
GO:0006729 tetrahydrobiopterin biosynthetic process
GO:0010044 response to aluminum ion
GO:0010288 response to lead ion
GO:0022900 electron transport chain
GO:0033762 response to glucagon
GO:0035690 cellular response to drug
GO:0051066 dihydrobiopterin metabolic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0043005 neuron projection
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  KJ891962 - Synthetic construct Homo sapiens clone ccsbBroadEn_01356 QDPR gene, encodes complete protein.
KR710618 - Synthetic construct Homo sapiens clone CCSBHm_00014690 QDPR (QDPR) mRNA, encodes complete protein.
AK296622 - Homo sapiens cDNA FLJ55000 complete cds, highly similar to Dihydropteridine reductase (EC 1.5.1.34).
HM005649 - Homo sapiens clone HTL-S-236P testis secretory sperm-binding protein Li 236P mRNA, complete cds.
M16447 - Human dihydropteridine reductase (hDHPR) mRNA, complete cds.
JD353483 - Sequence 334507 from Patent EP1572962.
AK289773 - Homo sapiens cDNA FLJ76220 complete cds, highly similar to Homo sapiens quinoid dihydropteridine reductase (QDPR), mRNA.
BC000576 - Homo sapiens quinoid dihydropteridine reductase, mRNA (cDNA clone MGC:1657 IMAGE:3162690), complete cds.
AK124382 - Homo sapiens cDNA FLJ42391 fis, clone 3NB692002806, highly similar to Dihydropteridine reductase (EC 1.5.1.34).
JD546041 - Sequence 527065 from Patent EP1572962.
AK223437 - Homo sapiens mRNA for quinoid dihydropteridine reductase variant, clone: FCC112A04.
X04882 - Human mRNA for dihydropteridine reductase (hDHPR).
JD331501 - Sequence 312525 from Patent EP1572962.
JD298660 - Sequence 279684 from Patent EP1572962.
JD551276 - Sequence 532300 from Patent EP1572962.
JD106252 - Sequence 87276 from Patent EP1572962.
JD508391 - Sequence 489415 from Patent EP1572962.
DQ891926 - Synthetic construct clone IMAGE:100004556; FLH181488.01X; RZPDo839D12136D quinoid dihydropteridine reductase (QDPR) gene, encodes complete protein.
DQ895113 - Synthetic construct Homo sapiens clone IMAGE:100009573; FLH181484.01L; RZPDo839D12135D quinoid dihydropteridine reductase (QDPR) gene, encodes complete protein.
CU674280 - Synthetic construct Homo sapiens gateway clone IMAGE:100017618 5' read QDPR mRNA.
AB528218 - Synthetic construct DNA, clone: pF1KE0159, Homo sapiens QDPR gene for quinoid dihydropteridine reductase, without stop codon, in Flexi system.
AM393718 - Synthetic construct Homo sapiens clone IMAGE:100002003 for hypothetical protein (QDPR gene).
JD069397 - Sequence 50421 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PHENYLALANINE-DEG1-PWY - L-phenylalanine degradation

Reactome (by CSHL, EBI, and GO)

Protein P09417 (Reactome details) participates in the following event(s):

R-HSA-71130 q-dihydrobiopterin + NADH + H+ => tetrahydrobiopterin + NAD+
R-HSA-71182 Phenylalanine and tyrosine catabolism
R-HSA-6788656 Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K158, B3KW71, DHPR, DHPR_HUMAN, ENST00000281243.1, ENST00000281243.2, ENST00000281243.3, ENST00000281243.4, ENST00000281243.5, ENST00000281243.6, ENST00000281243.7, ENST00000281243.8, ENST00000281243.9, NM_000320, P09417, Q53F52, Q9H3M5, SDR33C1, uc317jwa.1, uc317jwa.2
UCSC ID: ENST00000281243.10_7
RefSeq Accession: NM_000320.3
Protein: P09417 (aka DHPR_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.