Human Gene PROC (ENST00000234071.8_9) from GENCODE V47lift37
  Description: protein C, inactivator of coagulation factors Va and VIIIa, transcript variant 12 (from RefSeq NM_001375613.1)
Gencode Transcript: ENST00000234071.8_9
Gencode Gene: ENSG00000115718.18_13
Transcript (Including UTRs)
   Position: hg19 chr2:128,176,003-128,186,818 Size: 10,816 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr2:128,177,519-128,186,522 Size: 9,004 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:128,176,003-128,186,818)mRNA (may differ from genome)Protein (461 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PROC_HUMAN
DESCRIPTION: RecName: Full=Vitamin K-dependent protein C; EC=3.4.21.69; AltName: Full=Anticoagulant protein C; AltName: Full=Autoprothrombin IIA; AltName: Full=Blood coagulation factor XIV; Contains: RecName: Full=Vitamin K-dependent protein C light chain; Contains: RecName: Full=Vitamin K-dependent protein C heavy chain; Contains: RecName: Full=Activation peptide; Flags: Precursor;
FUNCTION: Protein C is a vitamin K-dependent serine protease that regulates blood coagulation by inactivating factors Va and VIIIa in the presence of calcium ions and phospholipids.
CATALYTIC ACTIVITY: Degradation of blood coagulation factors Va and VIIIa.
SUBUNIT: Synthesized as a single chain precursor, which is cleaved into a light chain and a heavy chain held together by a disulfide bond. The enzyme is then activated by thrombin, which cleaves a tetradecapeptide from the amino end of the heavy chain; this reaction, which occurs at the surface of endothelial cells, is strongly promoted by thrombomodulin.
INTERACTION: P51511:MMP15; NbExp=2; IntAct=EBI-1383018, EBI-1383043;
TISSUE SPECIFICITY: Plasma; synthesized in the liver.
PTM: The vitamin K-dependent, enzymatic carboxylation of some Glu residues allows the modified protein to bind calcium.
PTM: N- and O-glycosylated. Partial (70%) N-glycosylation of Asn- 371 with an atypical N-X-C site produces a higher molecular weight form referred to as alpha. The lower molecular weight form, not N- glycosylated at Asn-371, is beta. O-glycosylated with core 1 or possibly core 8 glycans.
PTM: The iron and 2-oxoglutarate dependent 3-hydroxylation of aspartate and asparagine is (R) stereospecific within EGF domains.
PTM: May be phosphorylated on a Ser or Thr in a region (AA 25-30) of the propeptide.
DISEASE: Defects in PROC are the cause of thrombophilia due to protein C deficiency, autosomal dominant (THPH3) [MIM:176860]. A hemostatic disorder characterized by impaired regulation of blood coagulation and a tendency to recurrent venous thrombosis. However, many adults with heterozygous disease may be asymptomatic. Individuals with decreased amounts of protein C are classically referred to as having type I protein C deficiency and those with normal amounts of a functionally defective protein as having type II deficiency.
DISEASE: Defects in PROC are the cause of thrombophilia due to protein C deficiency, autosomal recessive (THPH4) [MIM:612304]. A hemostatic disorder characterized by impaired regulation of blood coagulation and a tendency to recurrent venous thrombosis. It results in a thrombotic condition that can manifest as a severe neonatal disorder or as a milder disorder with late-onset thrombophilia. The severe form leads to neonatal death through massive neonatal venous thrombosis. Often associated with ecchymotic skin lesions which can turn necrotic called purpura fulminans, this disorder is very rare.
MISCELLANEOUS: Calcium also binds, with stronger affinity to another site, beyond the GLA domain. This GLA-independent binding site is necessary for the recognition of the thrombin- thrombomodulin complex.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 2 EGF-like domains.
SIMILARITY: Contains 1 Gla (gamma-carboxy-glutamate) domain.
SIMILARITY: Contains 1 peptidase S1 domain.
SEQUENCE CAUTION: Sequence=S76088; Type=Erroneous termination; Positions=151; Note=Translated as Cys;
WEB RESOURCE: Name=Wikipedia; Note=Protein C entry; URL="http://en.wikipedia.org/wiki/Protein_C";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PROC";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/proc/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PROC
Diseases sorted by gene-association score: thrombophilia due to protein c deficiency, autosomal recessive* (1581), thrombophilia due to protein c deficiency, autosomal dominant* (1232), protein c deficiency* (172), purpura fulminans (56), thrombophilia (33), purpura (30), thrombosis (23), marantic endocarditis (15), catastrophic antiphospholipid syndrome (10), meningococcemia (9), neonatal stroke (9), blood protein disease (7), thrombophilia due to thrombin defect (7), vein disease (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 144.28 RPKM in Liver
Total median expression: 157.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.1087-0.231 Picture PostScript Text
3' UTR -89.10296-0.301 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017857 - Coagulation_fac_subgr_Gla_dom
IPR000742 - EG-like_dom
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR000294 - GLA_domain
IPR009003 - Pept_cys/ser_Trypsin-like
IPR012224 - Pept_S1A_FX
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A

Pfam Domains:
PF00008 - EGF-like domain
PF00089 - Trypsin
PF00594 - Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
PF12661 - Human growth factor-like EGF
PF14670 - Coagulation Factor Xa inhibitory site

SCOP Domains:
50494 - Trypsin-like serine proteases
57196 - EGF/Laminin
57184 - Growth factor receptor domain
57630 - GLA-domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1AUT - X-ray 1LQV - X-ray 1PCU - Model 2PCT - Model 3F6U - X-ray 3JTC - X-ray 4DT7 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P04070
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0001889 liver development
GO:0006508 proteolysis
GO:0006888 ER to Golgi vesicle-mediated transport
GO:0007596 blood coagulation
GO:0007599 hemostasis
GO:0030195 negative regulation of blood coagulation
GO:0043066 negative regulation of apoptotic process
GO:0043687 post-translational protein modification
GO:0044267 cellular protein metabolic process
GO:0044537 regulation of circulating fibrinogen levels
GO:0050728 negative regulation of inflammatory response
GO:0050819 negative regulation of coagulation
GO:1903142 positive regulation of establishment of endothelial barrier

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005783 endoplasmic reticulum
GO:0005788 endoplasmic reticulum lumen
GO:0005794 Golgi apparatus
GO:0005796 Golgi lumen


-  Descriptions from all associated GenBank mRNAs
  AK298449 - Homo sapiens cDNA FLJ51034 complete cds, highly similar to Vitamin K-dependent protein C precursor (EC 3.4.21.69).
AK303773 - Homo sapiens cDNA FLJ51179 complete cds, highly similar to Vitamin K-dependent protein C precursor (EC 3.4.21.69).
AK298280 - Homo sapiens cDNA FLJ51023 complete cds, highly similar to Vitamin K-dependent protein C precursor (EC 3.4.21.69).
AK298454 - Homo sapiens cDNA FLJ51925 complete cds, highly similar to Vitamin K-dependent protein C precursor (EC 3.4.21.69).
X02750 - Human liver mRNA for protein C.
JD542122 - Sequence 523146 from Patent EP1572962.
E01189 - cDNA encoding human protein C.
BC034377 - Homo sapiens protein C (inactivator of coagulation factors Va and VIIIa), mRNA (cDNA clone MGC:34565 IMAGE:5188604), complete cds.
JD318560 - Sequence 299584 from Patent EP1572962.
DQ890791 - Synthetic construct clone IMAGE:100003421; FLH165973.01X; RZPDo839B0386D protein C (inactivator of coagulation factors Va and VIIIa) (PROC) gene, encodes complete protein.
DQ893947 - Synthetic construct Homo sapiens clone IMAGE:100008407; FLH165969.01L; RZPDo839B0385D protein C (inactivator of coagulation factors Va and VIIIa) (PROC) gene, encodes complete protein.
KJ897384 - Synthetic construct Homo sapiens clone ccsbBroadEn_06778 PROC gene, encodes complete protein.
KR710712 - Synthetic construct Homo sapiens clone CCSBHm_00015810 PROC (PROC) mRNA, encodes complete protein.
KR710713 - Synthetic construct Homo sapiens clone CCSBHm_00015834 PROC (PROC) mRNA, encodes complete protein.
KR710714 - Synthetic construct Homo sapiens clone CCSBHm_00015897 PROC (PROC) mRNA, encodes complete protein.
KR710715 - Synthetic construct Homo sapiens clone CCSBHm_00015959 PROC (PROC) mRNA, encodes complete protein.
CU689868 - Synthetic construct Homo sapiens gateway clone IMAGE:100017316 5' read PROC mRNA.
AB528552 - Synthetic construct DNA, clone: pF1KB5863, Homo sapiens PROC gene for protein C, without stop codon, in Flexi system.
E00961 - cDNA encoding human protein C.
K02059 - Human protein C, mRNA.
S72338 - type I protein C {exon 5} [human, venous thromboembolism patient, peripheral blood, mRNA Partial Mutant, 136 nt].
S50739 - protein C [human, mRNA Partial Mutant, 315 nt].
JD429237 - Sequence 410261 from Patent EP1572962.
JD056357 - Sequence 37381 from Patent EP1572962.
JD291184 - Sequence 272208 from Patent EP1572962.
JD233472 - Sequence 214496 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_amiPathway - Acute Myocardial Infarction
h_extrinsicPathway - Extrinsic Prothrombin Activation Pathway
h_intrinsicPathway - Intrinsic Prothrombin Activation Pathway

Reactome (by CSHL, EBI, and GO)

Protein P04070 (Reactome details) participates in the following event(s):

R-HSA-141040 Activated thrombin:thrombomodulin cleaves PROCR:Protein C to PROCR:Activated protein C
R-HSA-159771 Furin cleaves pro-protein C to protein C
R-HSA-5591052 PROCR binds Protein C
R-HSA-5591086 SERPINA5 binds activated protein C
R-HSA-5604929 Activated protein C binds Protein S
R-HSA-5606996 Soluble PROCR binds activated protein C
R-HSA-5603467 Activated protein C is released from PROCR
R-HSA-159795 GGCX gamma-carboxylates 3D-PROC(33-197) (pro-protein C light chain)
R-HSA-5607058 Activated protein C:PROCR binds F2R
R-HSA-8952289 FAM20C phosphorylates FAM20C substrates
R-HSA-141026 Activated protein C cleaves factor Va to factor Vi intermediate form
R-HSA-5591040 Activated protein C cleaves Factor Va intermediate form for Factor Va
R-HSA-5607002 Activated protein C cleaves factor VIIIa
R-HSA-140875 Common Pathway of Fibrin Clot Formation
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-159782 Removal of aminoterminal propeptides from gamma-carboxylated proteins
R-HSA-140877 Formation of Fibrin Clot (Clotting Cascade)
R-HSA-109582 Hemostasis
R-HSA-159763 Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus
R-HSA-159740 Gamma-carboxylation of protein precursors
R-HSA-159854 Gamma-carboxylation, transport, and amino-terminal cleavage of proteins
R-HSA-163841 Gamma carboxylation, hypusine formation and arylsulfatase activation
R-HSA-381426 Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-HSA-8957275 Post-translational protein phosphorylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B4DPQ7, ENST00000234071.1, ENST00000234071.2, ENST00000234071.3, ENST00000234071.4, ENST00000234071.5, ENST00000234071.6, ENST00000234071.7, NM_001375613, P04070, PROC_HUMAN, Q15189, Q15190, Q16001, Q53S74, Q9UC55, uc317dyl.1, uc317dyl.2
UCSC ID: ENST00000234071.8_9
RefSeq Accession: NM_000312.4
Protein: P04070 (aka PROC_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.