Human Gene PRKG1 (ENST00000373980.11_9) from GENCODE V47lift37
  Description: protein kinase cGMP-dependent 1, transcript variant 2 (from RefSeq NM_006258.4)
Gencode Transcript: ENST00000373980.11_9
Gencode Gene: ENSG00000185532.20_15
Transcript (Including UTRs)
   Position: hg19 chr10:52,834,247-54,058,110 Size: 1,223,864 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr10:52,834,351-54,053,660 Size: 1,219,310 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:52,834,247-54,058,110)mRNA (may differ from genome)Protein (686 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KGP1_HUMAN
DESCRIPTION: RecName: Full=cGMP-dependent protein kinase 1; Short=cGK 1; Short=cGK1; EC=2.7.11.12; AltName: Full=cGMP-dependent protein kinase I; Short=cGKI;
FUNCTION: Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3- induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: In the absence of cGMP, PRKG1 activity is suppressed by autoinhibitory contacts.
SUBUNIT: Isoform alpha: parallel homodimer or heterodimer and also heterotetramer. Interacts directly with PPP1R12A. Non-covalent dimer of dimer of PRKG1-PRKG1 and PPP1R12A-PPP1R12A. This interaction targets PRKG1 to stress fibers to mediate smooth muscle cell relaxation and vasodilation in responses to rises in cGMP. Isoform beta: antiparallel homodimer. Part of cGMP kinase signaling complex at least composed of ACTA2/alpha-actin, CNN1/calponin H1, PLN/phospholamban, PRKG1 and ITPR1 (By similarity). Interacts with MRVI1. Forms a stable complex with ITPR1, MRVI1, and isoform beta of PRKG1. Interacts with TRPC7 (via ankyrin repeat domain). Isoform alpha interacts with RGS2. Interacts with GTF2I.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Note=Colocalized with TRPC7 in the plasma membrane (By similarity).
TISSUE SPECIFICITY: Primarily expressed in lung and placenta.
DOMAIN: Composed of an N-terminal leucine-zipper domain followed by an autoinhibitory domain, which mediate homodimer formation and inhibit kinase activity, respectively. Next, two cGMP-binding domains are followed by the catalytic domain at the C-terminus. Binding of cGMP to cGMP-binding domains results in a conformational change that activates kinase activity by removing the autoinhibitory domain from the catalytic cleft leaving the catalytic domain free to phosphorylate downstream substrates. Isoforms alpha and beta have identical cGMP-binding and catalytic domains but differ in their leucine zipper and autoinhibitory sequences and therefore differ in their dimerization substrates and kinase enzyme activity.
DOMAIN: Heterotetramerization is mediated by the interaction between a coiled-coil of PRKG1 and the leucine/isoleucine zipper of PPP1R12A/MBS, the myosin-binding subunit of the myosin phosphatase.
PTM: Autophosphorylation increases kinase activity.
PTM: 65 kDa monomer is produced by proteolytic cleavage (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. cGMP subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 2 cyclic nucleotide-binding domains.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRKG1
Diseases sorted by gene-association score: aortic aneurysm, familial thoracic 8* (1230), prkg1-related thoracic aortic aneurysms and aortic dissections* (500), thoracic aortic aneurysms and aortic dissections* (200), phosphoglycerate kinase deficiency (21), myoglobinuria recurrent (8), cowchock syndrome (7), aneurysm (7), aortic aneurysm (7), aortic disease (7), intraductal papilloma (7), gitelman syndrome (6), sexual disorder (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D005996 Nitroglycerin
  • C090860 8-(4-chlorophenylthio)guanosine 3',5'-cyclic monophosphorothioate
  • C016276 8-bromocyclic GMP
  • C083763 8-bromoguanosino-3',5'-cyclic monophosphorothioate
  • D001564 Benzo(a)pyrene
  • D026423 S-Nitroso-N-Acetylpenicillamine
  • D013749 Tetrachlorodibenzodioxin
  • C091861 spermine nitric oxide complex
  • C004648 testosterone enanthate
  • C439285 (5-fluoro-2-methyl-1-(4-pyridyl)methylene-3-(N-benzyl)-indene)-acetamide hydrochloride
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.89 RPKM in Artery - Aorta
Total median expression: 184.13 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -34.50104-0.332 Picture PostScript Text
3' UTR -1000.104450-0.225 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR016232 - cGMP-dependent_protein_kinase
IPR002374 - cGMP_dep_kinase
IPR018490 - cNMP-bd-like
IPR018488 - cNMP-bd_CS
IPR000595 - cNMP-bd_dom
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR014710 - RmlC-like_jellyroll
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00027 - Cyclic nucleotide-binding domain
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like
PF16808 - Coiled-coil N-terminus of cGMP-dependent protein kinase

SCOP Domains:
51206 - cAMP-binding domain-like
52374 - Nucleotidylyl transferase
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1ZXA - NMR MuPIT 3NMD - X-ray 3OCP - X-ray MuPIT 3OD0 - X-ray MuPIT 3OGJ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13976
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene Details   Gene Details 
Gene Sorter   Gene Sorter 
  Ensembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004692 cGMP-dependent protein kinase activity
GO:0005246 calcium channel regulator activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0030553 cGMP binding
GO:0042802 identical protein binding

Biological Process:
GO:0001764 neuron migration
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0008152 metabolic process
GO:0016310 phosphorylation
GO:0016358 dendrite development
GO:0019934 cGMP-mediated signaling
GO:0030036 actin cytoskeleton organization
GO:0030900 forebrain development
GO:0043087 regulation of GTPase activity
GO:0045986 negative regulation of smooth muscle contraction
GO:0060087 relaxation of vascular smooth muscle
GO:0090331 negative regulation of platelet aggregation
GO:1904706 negative regulation of vascular smooth muscle cell proliferation
GO:1904753 negative regulation of vascular associated smooth muscle cell migration

Cellular Component:
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  D45864 - Homo sapiens mRNA for cGMP-dependent protein kinase type I alpha, complete cds.
AK313416 - Homo sapiens cDNA, FLJ93954.
EF560730 - Homo sapiens clone DKFZp686K042 PRKG1 protein (PRKG1) mRNA, complete cds.
BC127090 - Homo sapiens protein kinase, cGMP-dependent, type I, mRNA (cDNA clone MGC:150609 IMAGE:40123332), complete cds.
Y07512 - Human mRNA for type I beta cGMP-dependent protein kinase (EC 2.7.1.37).
BC062688 - Homo sapiens protein kinase, cGMP-dependent, type I, mRNA (cDNA clone IMAGE:30350012), complete cds.
AB590766 - Synthetic construct DNA, clone: pFN21AB6261, Homo sapiens PRKG1 gene for protein kinase, cGMP-dependent, type I, without stop codon, in Flexi system.
GQ129235 - Synthetic construct Homo sapiens clone HAIB:100068643; DKFZo004A0436 protein kinase, cGMP-dependent, type I protein (PRKG1) gene, partial cds.
GQ129236 - Synthetic construct Homo sapiens clone HAIB:100068547; DKFZo008A0435 protein kinase, cGMP-dependent, type I protein (PRKG1) gene, complete cds.
KJ891891 - Synthetic construct Homo sapiens clone ccsbBroadEn_01285 PRKG1 gene, encodes complete protein.
AK300110 - Homo sapiens cDNA FLJ58408 complete cds, highly similar to cGMP-dependent protein kinase 1, alphaisozyme (EC 2.7.11.12).
AK093436 - Homo sapiens cDNA FLJ36117 fis, clone TESTI2022400, highly similar to cGMP-dependent protein kinase 1, beta isozyme (EC 2.7.11.12).
JD491946 - Sequence 472970 from Patent EP1572962.
JD139457 - Sequence 120481 from Patent EP1572962.
JD557178 - Sequence 538202 from Patent EP1572962.
JD298497 - Sequence 279521 from Patent EP1572962.
JD260152 - Sequence 241176 from Patent EP1572962.
JD267261 - Sequence 248285 from Patent EP1572962.
JD428898 - Sequence 409922 from Patent EP1572962.
JD354877 - Sequence 335901 from Patent EP1572962.
JD297260 - Sequence 278284 from Patent EP1572962.
JD249306 - Sequence 230330 from Patent EP1572962.
JD434520 - Sequence 415544 from Patent EP1572962.
JD101139 - Sequence 82163 from Patent EP1572962.
JD312618 - Sequence 293642 from Patent EP1572962.
JD558111 - Sequence 539135 from Patent EP1572962.
JD360727 - Sequence 341751 from Patent EP1572962.
JD284957 - Sequence 265981 from Patent EP1572962.
JD053094 - Sequence 34118 from Patent EP1572962.
JD095899 - Sequence 76923 from Patent EP1572962.
JD422157 - Sequence 403181 from Patent EP1572962.
JD453752 - Sequence 434776 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13976 (Reactome details) participates in the following event(s):

R-HSA-4551453 PRKG is activated by binding to high levels of cGMP in the absence of WNT signaling
R-HSA-4086398 Ca2+ pathway
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-195721 Signaling by WNT
R-HSA-162582 Signal Transduction
R-HSA-418451 cGMP stimulates Protein Kinase G
R-HSA-418442 PKG1 phosphorylates IRAG:IP3R1 inhibiting IP3-stimulated Ca2+ release
R-HSA-418549 PKG1 phosphorylates BK channels
R-HSA-913996 PKA/PKG phosphorylate Rap1GAP2
R-HSA-418457 cGMP effects
R-HSA-392154 Nitric oxide stimulates guanylate cyclase
R-HSA-392517 Rap1 signalling
R-HSA-418346 Platelet homeostasis
R-HSA-1280218 Adaptive Immune System
R-HSA-109582 Hemostasis
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A5YM56, B3KSF3, E2PU10, ENST00000373980.1, ENST00000373980.10, ENST00000373980.2, ENST00000373980.3, ENST00000373980.4, ENST00000373980.5, ENST00000373980.6, ENST00000373980.7, ENST00000373980.8, ENST00000373980.9, KGP1_HUMAN, NM_006258, P14619, PRKG1B, PRKGR1A, PRKGR1B, Q13976, Q5JP05, Q5JSJ6, Q6P5T7, uc318lfk.1, uc318lfk.2
UCSC ID: ENST00000373980.11_9
RefSeq Accession: NM_006258.4
Protein: Q13976 (aka KGP1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene PRKG1:
taa (Heritable Thoracic Aortic Disease Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.