Human Gene PMPCB (ENST00000249269.9_5) from GENCODE V47lift37
  Description: peptidase, mitochondrial processing subunit beta (from RefSeq NM_004279.3)
Gencode Transcript: ENST00000249269.9_5
Gencode Gene: ENSG00000105819.15_11
Transcript (Including UTRs)
   Position: hg19 chr7:102,937,882-102,955,133 Size: 17,252 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr7:102,937,907-102,952,718 Size: 14,812 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:102,937,882-102,955,133)mRNA (may differ from genome)Protein (489 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MPPB_HUMAN
DESCRIPTION: RecName: Full=Mitochondrial-processing peptidase subunit beta; EC=3.4.24.64; AltName: Full=Beta-MPP; AltName: Full=P-52; Flags: Precursor;
FUNCTION: Cleaves presequences (transit peptides) from mitochondrial protein precursors (By similarity).
CATALYTIC ACTIVITY: Release of N-terminal transit peptides from precursor proteins imported into the mitochondrion, typically with Arg in position P2.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
SUBUNIT: Heterodimer of alpha and beta subunits (By similarity).
SUBCELLULAR LOCATION: Mitochondrion matrix (By similarity).
SIMILARITY: Belongs to the peptidase M16 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.78 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1063.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR 0.00250.000 Picture PostScript Text
3' UTR -534.302415-0.221 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011249 - Metalloenz_metal-bd
IPR011237 - Pept_M16_core
IPR011765 - Pept_M16_N
IPR001431 - Pept_M16_Zn_BS
IPR007863 - Peptidase_M16_C

Pfam Domains:
PF00675 - Insulinase (Peptidase family M16)
PF05193 - Peptidase M16 inactive domain

SCOP Domains:
63411 - LuxS/MPP-like metallohydrolase

ModBase Predicted Comparative 3D Structure on O75439
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004175 endopeptidase activity
GO:0004222 metalloendopeptidase activity
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
GO:0006508 proteolysis
GO:0006627 protein processing involved in protein targeting to mitochondrion
GO:0006851 mitochondrial calcium ion transport
GO:0009060 aerobic respiration
GO:0016485 protein processing

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005750 mitochondrial respiratory chain complex III
GO:0005759 mitochondrial matrix
GO:0017087 mitochondrial processing peptidase complex


-  Descriptions from all associated GenBank mRNAs
  KJ901985 - Synthetic construct Homo sapiens clone ccsbBroadEn_11379 PMPCB gene, encodes complete protein.
KJ901984 - Synthetic construct Homo sapiens clone ccsbBroadEn_11378 PMPCB gene, encodes complete protein.
AK057656 - Homo sapiens cDNA FLJ33094 fis, clone TRACH2000703, highly similar to Mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64).
AK000994 - Homo sapiens cDNA FLJ10132 fis, clone HEMBA1003046, highly similar to Mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64).
AK289864 - Homo sapiens cDNA FLJ78497 complete cds.
BC010398 - Homo sapiens peptidase (mitochondrial processing) beta, mRNA (cDNA clone IMAGE:4292383), with apparent retained intron.
AF054182 - Homo sapiens mitochondrial processing peptidase beta-subunit mRNA, complete cds.
AK309928 - Homo sapiens cDNA, FLJ99969.
AK098616 - Homo sapiens cDNA FLJ25750 fis, clone TST06154, highly similar to MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PRECURSOR (EC 3.4.24.64).
AK297354 - Homo sapiens cDNA FLJ58513 complete cds, highly similar to Mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64).
DQ896162 - Synthetic construct Homo sapiens clone IMAGE:100010622; FLH190772.01L; RZPDo839D1166D peptidase (mitochondrial processing) beta (PMPCB) gene, encodes complete protein.
DQ892913 - Synthetic construct clone IMAGE:100005543; FLH190776.01X; RZPDo839D1176D peptidase (mitochondrial processing) beta (PMPCB) gene, encodes complete protein.
BC014079 - Homo sapiens peptidase (mitochondrial processing) beta, mRNA (cDNA clone IMAGE:4309193), partial cds.
CU680768 - Synthetic construct Homo sapiens gateway clone IMAGE:100019182 5' read PMPCB mRNA.
AL050216 - Homo sapiens mRNA; cDNA DKFZp586I1223 (from clone DKFZp586I1223); partial cds.
AK090763 - Homo sapiens cDNA FLJ33444 fis, clone BRALZ2000189.
JD090998 - Sequence 72022 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75439 (Reactome details) participates in the following event(s):

R-HSA-1299476 MPP cleaves targeting peptide (presequence) of inner membrane precursors
R-HSA-1299478 MPP cleaves targeting peptide (presequence) of matrix precursors
R-HSA-8949649 PMPCA:PMPCB cleaves the transit peptide of proSMDT1 (proEMRE)
R-HSA-1268020 Mitochondrial protein import
R-HSA-8949664 Processing of SMDT1
R-HSA-392499 Metabolism of proteins
R-HSA-8949215 Mitochondrial calcium ion transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000249269.1, ENST00000249269.2, ENST00000249269.3, ENST00000249269.4, ENST00000249269.5, ENST00000249269.6, ENST00000249269.7, ENST00000249269.8, MPPB, MPPB_HUMAN, NM_004279, O60416, O75439, Q96FV4, uc317ezc.1, uc317ezc.2
UCSC ID: ENST00000249269.9_5
RefSeq Accession: NM_004279.3
Protein: O75439 (aka MPPB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.