Human Gene PAWR (ENST00000328827.9_8) from GENCODE V47lift37
  Description: pro-apoptotic WT1 regulator, transcript variant 1 (from RefSeq NM_002583.4)
Gencode Transcript: ENST00000328827.9_8
Gencode Gene: ENSG00000177425.11_12
Transcript (Including UTRs)
   Position: hg19 chr12:79,978,659-80,084,744 Size: 106,086 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr12:79,986,387-80,084,024 Size: 97,638 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:79,978,659-80,084,744)mRNA (may differ from genome)Protein (340 aa)
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-  Comments and Description Text from UniProtKB
  ID: PAWR_HUMAN
DESCRIPTION: RecName: Full=PRKC apoptosis WT1 regulator protein; AltName: Full=Prostate apoptosis response 4 protein; Short=Par-4;
FUNCTION: Pro-apoptopic protein capable of selectively inducing apoptosis in cancer cells, sensitizing the cells to diverse apoptotic stimuli and causing regression of tumors in animal models. Induces apoptosis in certain cancer cells by activation of the Fas prodeath pathway and coparallel inhibition of NF-kappa-B transcriptional activity. Inhibits the transcriptional activation and augments the transcriptional repression mediated by WT1. Down- regulates the anti-apoptotic protein BCL2 via its interaction with WT1. Seems also to be a transcriptional repressor by itself. May be directly involved in regulating the amyloid precursor protein (APP) cleavage activity of BACE1.
SUBUNIT: Interacts with WT1, via the C-terminal region. Homooligomer. Interacts also with a wide variety of proteins, such as atypical PKCs, p62, DAPK3 kinase and THAP1. Interacts with actin, AATF, BACE1, SPSB1, SPSB2 AND SPSB4. Component of a ternary complex composed of SQSTM1 and PRKCZ.
INTERACTION: P11021:HSPA5; NbExp=8; IntAct=EBI-595869, EBI-354921;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Mainly cytoplasmic in absence of apoptosis signal and in normal cells. Nuclear in most cancer cell lines. Nuclear entry seems to be essential but not sufficient for apoptosis (By similarity). Nuclear localization includes nucleoplasm and PML nuclear bodies.
TISSUE SPECIFICITY: Widely expressed. Expression is elevated in various neurodegenerative diseases such as amyotrophic lateral sclerosis, Alzheimer, Parkinson and Huntington diseases and stroke. Down-regulated in several cancers.
INDUCTION: By apoptosis.
DOMAIN: The leucine-zipper domain is not essential for apoptosis, but is required for sensitization of cells to exogenous apoptotic insults and for interaction with its partners (By similarity).
DOMAIN: The SAC domain is a death-inducing domain selective for apoptosis induction in cancer cells. This domain is essential for nuclear entry, Fas activation, inhibition of NF-kappa-B activity and induction of apoptosis in cancer cells (By similarity).
PTM: Preferentially phosphorylated at the Thr-163 by PKC in cancer cells (By similarity).
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/PAWRID41641ch12q21.html";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/pawr/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PAWR
Diseases sorted by gene-association score: prostate cancer (2), wilms tumor susceptibility-5 (2), amyotrophic lateral sclerosis 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D003993 Dibutyl Phthalate
  • D004958 Estradiol
  • D010634 Phenobarbital
  • C049325 1,2-dithiol-3-thione
  • C090859 1-((4-methylsulfonyl)phenyl)-3-trifluoromethyl-5-(4-fluorophenyl)pyrazole
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C093973 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one
  • C075773 4-phenylbutyric acid
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • C553817 7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-one
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.16 RPKM in Uterus
Total median expression: 236.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -112.00240-0.467 Picture PostScript Text
3' UTR -1811.507728-0.234 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026117 - Par-4

SCOP Domains:
143865 - CorA soluble domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2JK9 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q96IZ0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003714 transcription corepressor activity
GO:0003779 actin binding
GO:0005515 protein binding
GO:0019899 enzyme binding
GO:0043522 leucine zipper domain binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006915 apoptotic process
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0030889 negative regulation of B cell proliferation
GO:0042094 interleukin-2 biosynthetic process
GO:0042130 negative regulation of T cell proliferation
GO:0042986 positive regulation of amyloid precursor protein biosynthetic process
GO:0043065 positive regulation of apoptotic process
GO:0048147 negative regulation of fibroblast proliferation
GO:0050860 negative regulation of T cell receptor signaling pathway
GO:0051017 actin filament bundle assembly
GO:0097190 apoptotic signaling pathway
GO:1901300 positive regulation of hydrogen peroxide-mediated programmed cell death
GO:2000774 positive regulation of cellular senescence

Cellular Component:
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005884 actin filament


-  Descriptions from all associated GenBank mRNAs
  BC009637 - Homo sapiens cDNA clone IMAGE:3892559, partial cds.
AK095165 - Homo sapiens cDNA FLJ37846 fis, clone BRSSN2012838.
JD229462 - Sequence 210486 from Patent EP1572962.
JD092362 - Sequence 73386 from Patent EP1572962.
JD183998 - Sequence 165022 from Patent EP1572962.
JD066702 - Sequence 47726 from Patent EP1572962.
JD176497 - Sequence 157521 from Patent EP1572962.
JD066703 - Sequence 47727 from Patent EP1572962.
JD176498 - Sequence 157522 from Patent EP1572962.
BC007018 - Homo sapiens PRKC, apoptosis, WT1, regulator, mRNA (cDNA clone MGC:12354 IMAGE:3828412), complete cds.
U63809 - Homo sapiens prostate apoptosis response protein par-4 mRNA, complete cds.
JD058694 - Sequence 39718 from Patent EP1572962.
JD350055 - Sequence 331079 from Patent EP1572962.
JD319994 - Sequence 301018 from Patent EP1572962.
CR536549 - Homo sapiens full open reading frame cDNA clone RZPDo834F0920D for gene PAWR, PRKC, apoptosis, WT1, regulator; complete cds, incl. stopcodon.
AB590922 - Synthetic construct DNA, clone: pFN21AB7673, Homo sapiens PAWR gene for PRKC, apoptosis, WT1, regulator, without stop codon, in Flexi system.
JD279153 - Sequence 260177 from Patent EP1572962.
JD399389 - Sequence 380413 from Patent EP1572962.
JD086454 - Sequence 67478 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000328827.1, ENST00000328827.2, ENST00000328827.3, ENST00000328827.4, ENST00000328827.5, ENST00000328827.6, ENST00000328827.7, ENST00000328827.8, NM_002583, O75796, PAR4, PAWR_HUMAN, Q6FHY9, Q8N700, Q96IZ0, uc317soy.1, uc317soy.2
UCSC ID: ENST00000328827.9_8
RefSeq Accession: NM_002583.4
Protein: Q96IZ0 (aka PAWR_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.