Human Gene PAOX (ENST00000278060.10_4) from GENCODE V47lift37
  Description: polyamine oxidase, transcript variant 1 (from RefSeq NM_152911.4)
Gencode Transcript: ENST00000278060.10_4
Gencode Gene: ENSG00000148832.16_8
Transcript (Including UTRs)
   Position: hg19 chr10:135,192,766-135,205,198 Size: 12,433 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr10:135,192,821-135,204,959 Size: 12,139 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:135,192,766-135,205,198)mRNA (may differ from genome)Protein (511 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAOX_HUMAN
DESCRIPTION: RecName: Full=Peroxisomal N(1)-acetyl-spermine/spermidine oxidase; EC=1.5.3.13; AltName: Full=Polyamine oxidase;
FUNCTION: Flavoenzyme which catalyzes the oxidation of N(1)- acetylspermine to spermidine and is thus involved in the polyamine back-conversion. Can also oxidize N(1)-acetylspermidine to putrescine. Substrate specificity: N(1)-acetylspermine = N(1)- acetylspermidine > N(1),N(12)-diacylspermine >> spermine. Does not oxidize spermidine. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs.
CATALYTIC ACTIVITY: N(1)-acetylspermine + O(2) + H(2)O = spermidine + 3-acetamidopropanal + H(2)O(2).
CATALYTIC ACTIVITY: N(1)-acetylspermidine + O(2) + H(2)O = putrescine + 3-acetamidopropanal + H(2)O(2).
CATALYTIC ACTIVITY: N(1),N(12)-diacetylspermine + O(2) + H(2)O = N(1)-acetylspermidine + 3-acetamidobutanal + H(2)O(2).
COFACTOR: Binds 1 FAD per subunit (By similarity).
PATHWAY: Amine and polyamine metabolism; spermine metabolism.
SUBUNIT: Monomer (By similarity).
SUBCELLULAR LOCATION: Peroxisome (By similarity). Cytoplasm (By similarity).
TISSUE SPECIFICITY: Widely expressed. Not detected in spleen. Expressed at lower level in neoplastic tissues.
INDUCTION: By polyamine analogs.
MISCELLANEOUS: Oxidizes N(1)-acetylated polyamines on the exo-side of their N(4)-amino groups. Plant PAO oxidizes spermine on the endo-side of the N(4)-nitrogen (By similarity).
SIMILARITY: Belongs to the flavin monoamine oxidase family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 71.25 RPKM in Testis
Total median expression: 242.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.4055-0.189 Picture PostScript Text
3' UTR -91.80239-0.384 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002937 - Amino_oxidase

Pfam Domains:
PF01593 - Flavin containing amine oxidoreductase
PF13450 - NAD(P)-binding Rossmann-like domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
51905 - FAD/NAD(P)-binding domain
51971 - Nucleotide-binding domain
51984 - MurCD N-terminal domain
54373 - FAD-linked reductases, C-terminal domain

ModBase Predicted Comparative 3D Structure on Q6QHF9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0016491 oxidoreductase activity
GO:0046592 polyamine oxidase activity
GO:0052899 N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
GO:0052901 spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0052902 spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity
GO:0052903 N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
GO:0052904 N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity

Biological Process:
GO:0006596 polyamine biosynthetic process
GO:0006598 polyamine catabolic process
GO:0006625 protein targeting to peroxisome
GO:0008215 spermine metabolic process
GO:0009446 putrescine biosynthetic process
GO:0009447 putrescine catabolic process
GO:0046203 spermidine catabolic process
GO:0046208 spermine catabolic process
GO:0055114 oxidation-reduction process
GO:1901307 positive regulation of spermidine biosynthetic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005777 peroxisome
GO:0005782 peroxisomal matrix
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AF312698 - Homo sapiens peroxisomal N1-acetyl-spermine/spermidine oxidase mRNA, complete cds.
BC032778 - Homo sapiens polyamine oxidase (exo-N4-amino), mRNA (cDNA clone MGC:45464 IMAGE:4932036), complete cds.
AY541516 - Homo sapiens polyamine oxidase splice variant 5 mRNA, complete cds, alternatively spliced.
AY541513 - Homo sapiens polyamine oxidase splice variant 2 mRNA, complete cds, alternatively spliced.
AY541514 - Homo sapiens polyamine oxidase splice variant 3 mRNA, complete cds, alternatively spliced.
AY541515 - Homo sapiens polyamine oxidase splice variant 4 mRNA, complete cds, alternatively spliced.
AY541517 - Homo sapiens polyamine oxidase splice variant 6 mRNA, complete cds, alternatively spliced.
AY541518 - Homo sapiens polyamine oxidase splice variant 7 mRNA, complete cds, alternatively spliced.
AY541519 - Homo sapiens polyamine oxidase splice variant 8 mRNA, complete cds, alternatively spliced.
AY541520 - Homo sapiens polyamine oxidase splice variant 9 mRNA, complete cds, alternatively spliced.
AY541521 - Homo sapiens polyamine oxidase splice variant 10 mRNA, complete cds, alternatively spliced.
AY541523 - Homo sapiens polyamine oxidase splice variant 12 mRNA, complete cds, alternatively spliced.
AY541524 - Homo sapiens polyamine oxidase splice variant 13 mRNA, complete cds, alternatively spliced.
AY358418 - Homo sapiens clone DNA86592 ESTG1923 (UNQ1923) mRNA, complete cds.
DQ894497 - Synthetic construct Homo sapiens clone IMAGE:100008957; FLH171004.01L; RZPDo839E0199D polyamine oxidase (exo-N4-amino) (PAOX) gene, encodes complete protein.
DQ896670 - Synthetic construct Homo sapiens clone IMAGE:100011130; FLH196497.01L; RZPDo839E03155D polyamine oxidase (exo-N4-amino) (PAOX) gene, encodes complete protein.
DQ891313 - Synthetic construct clone IMAGE:100003943; FLH171008.01X; RZPDo839E01100D polyamine oxidase (exo-N4-amino) (PAOX) gene, encodes complete protein.
DQ893351 - Synthetic construct clone IMAGE:100005981; FLH196501.01X; RZPDo839E03156D polyamine oxidase (exo-N4-amino) (PAOX) gene, encodes complete protein.
AK128001 - Homo sapiens cDNA FLJ46119 fis, clone TESTI2037877, highly similar to Peroxisomal N1-acetyl-spermine/spermidineoxidase (EC 1.5.3.11).
AF226657 - Homo sapiens peroxisomal N1-acetyl-spermine/spermidine oxidase (PAO) mRNA, partial cds.
AY541522 - Homo sapiens polyamine oxidase splice variant 11 mRNA, complete cds, alternatively spliced.
AL834535 - Homo sapiens mRNA; cDNA DKFZp434J245 (from clone DKFZp434J245).
AK124186 - Homo sapiens cDNA FLJ42192 fis, clone THYMU2033085.
JD485763 - Sequence 466787 from Patent EP1572962.
JD116407 - Sequence 97431 from Patent EP1572962.
JD494046 - Sequence 475070 from Patent EP1572962.
JD063729 - Sequence 44753 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6117 - spermine and spermidine degradation I

Reactome (by CSHL, EBI, and GO)

Protein Q6QHF9 (Reactome details) participates in the following event(s):

R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-141348 PAO:FAD oxidises NASPM to PTCN
R-HSA-141351 PAOX:FAD oxidises NASPN to SPM
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-9033241 Peroxisomal protein import
R-HSA-141334 PAOs oxidise polyamines to amines
R-HSA-351200 Interconversion of polyamines
R-HSA-392499 Metabolism of proteins
R-HSA-140179 Amine Oxidase reactions
R-HSA-351202 Metabolism of polyamines
R-HSA-211945 Phase I - Functionalization of compounds
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DXI6, ENST00000278060.1, ENST00000278060.2, ENST00000278060.3, ENST00000278060.4, ENST00000278060.5, ENST00000278060.6, ENST00000278060.7, ENST00000278060.8, ENST00000278060.9, NM_152911, PAO, PAOX_HUMAN, Q5VWY0, Q6QHF5, Q6QHF6, Q6QHF7, Q6QHF8, Q6QHF9, Q6QHG0, Q6QHG1, Q6QHG2, Q6QHG3, Q6QHG4, Q6QHG5, Q6QHG6, Q86WP9, Q8N555, Q8NCX3, uc317jnr.1, uc317jnr.2, UNQ1923/PRO4398
UCSC ID: ENST00000278060.10_4
RefSeq Accession: NM_152911.4
Protein: Q6QHF9 (aka PAOX_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.