Human Gene OR3A2 (ENST00000573491.5_9) from GENCODE V47lift37

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Description: olfactory receptor family 3 subfamily A member 2 (from HGNC OR3A2)
Gencode Transcript: ENST00000573491.5_9
Gencode Gene: ENSG00000221882.5_17
Transcript (Including UTRs)
Position: hg19 chr17:3,182,069-3,289,587 Size: 107,519 Total Exon Count: 5 Strand: -
Coding Region
Position: hg19 chr17:3,182,069-3,182,211 Size: 143 Coding Exon Count: 1

Page Index	Sequence and Links	Primers	CTD	Gene Alleles	RNA-Seq Expression
RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr17:3,182,069-3,289,587)			mRNA (may differ from genome)		Protein (47 aa)
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	AlphaFold
BioGPS	Ensembl	ExonPrimer	GeneCards	HGNC	MGI
PubMed	UniProtKB	Wikipedia

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D017638 Asbestos, Crocidolite

Common Gene Haplotype Alleles


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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 0.73 RPKM in Testis Total median expression: 1.11 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-148.50	443	-0.335	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	BC095517 - Homo sapiens olfactory receptor, family 3, subfamily A, member 2, mRNA (cDNA clone MGC:111732 IMAGE:6971961), complete cds.

Other Names for This Gene


	Alternate Gene Symbols: A0A286YF70, A0A286YF70_HUMAN, ENST00000573491.1, ENST00000573491.2, ENST00000573491.3, ENST00000573491.4, OR3A2 , uc326cmu.1, uc326cmu.2 UCSC ID: ENST00000573491.5_9

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.