Human Gene OBSL1 (ENST00000404537.6_8) from GENCODE V47lift37
  Description: obscurin like cytoskeletal adaptor 1, transcript variant 1 (from RefSeq NM_015311.3)
Gencode Transcript: ENST00000404537.6_8
Gencode Gene: ENSG00000124006.15_12
Transcript (Including UTRs)
   Position: hg19 chr2:220,415,450-220,436,261 Size: 20,812 Total Exon Count: 21 Strand: -
Coding Region
   Position: hg19 chr2:220,415,557-220,435,954 Size: 20,398 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:220,415,450-220,436,261)mRNA (may differ from genome)Protein (1896 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: OBSL1_HUMAN
DESCRIPTION: RecName: Full=Obscurin-like protein 1; Flags: Precursor;
SUBUNIT: Interacts with CCDC8 and CUL7.
TISSUE SPECIFICITY: Widely expressed, with predominant levels found in the heart.
DISEASE: Defects in OBSL1 are the cause of 3M syndrome type 2 (3M2) [MIM:612921]. An autosomal recessive disorder characterized by severe pre- and postnatal growth retardation, facial dysmorphism, large head circumference, and normal intelligence and endocrine function. Skeletal changes include long slender tubular bones and tall vertebral bodies.
SIMILARITY: Contains 1 fibronectin type-III domain.
SIMILARITY: Contains 11 Ig-like (immunoglobulin-like) domains.
SEQUENCE CAUTION: Sequence=AAH07201.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: OBSL1
Diseases sorted by gene-association score: 3-m syndrome 2* (900), 3-m syndrome, obsl1-related* (500), 3-m syndrome 1* (85), dubowitz syndrome (10)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 125.26 RPKM in Ovary
Total median expression: 1013.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -164.50307-0.536 Picture PostScript Text
3' UTR -29.20107-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013098 - Ig_I-set
IPR003599 - Ig_sub
IPR003598 - Ig_sub2

Pfam Domains:
PF00047 - Immunoglobulin domain
PF07679 - Immunoglobulin I-set domain
PF13895 - Immunoglobulin domain
PF13927 - Immunoglobulin domain

SCOP Domains:
48726 - Immunoglobulin
49265 - Fibronectin type III
53182 - Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
55961 - Bet v1-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2CPC - NMR MuPIT 2E6P - NMR MuPIT 2E6Q - NMR MuPIT 2LU7 - NMR MuPIT 2LVC - NMR MuPIT 2WP3 - X-ray MuPIT 2WWK - X-ray MuPIT 2WWM - X-ray MuPIT 3KNB - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O75147
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008093 cytoskeletal adaptor activity
GO:0008307 structural constituent of muscle
GO:0051015 actin filament binding
GO:0051371 muscle alpha-actinin binding
GO:0097493 structural molecule activity conferring elasticity

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0006941 striated muscle contraction
GO:0007010 cytoskeleton organization
GO:0007015 actin filament organization
GO:0007030 Golgi organization
GO:0007088 regulation of mitotic nuclear division
GO:0034067 protein localization to Golgi apparatus
GO:0043687 post-translational protein modification
GO:0045214 sarcomere organization
GO:0050775 positive regulation of dendrite morphogenesis
GO:0055003 cardiac myofibril assembly
GO:0071688 striated muscle myosin thick filament assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005859 muscle myosin complex
GO:0014704 intercalated disc
GO:0030018 Z disc
GO:0031430 M band
GO:0048471 perinuclear region of cytoplasm
GO:1990393 3M complex


-  Descriptions from all associated GenBank mRNAs
  AB014557 - Homo sapiens mRNA for KIAA0657 protein, partial cds.
EF063638 - Homo sapiens obscurin-like 1 isoform A (OBSL1) mRNA, complete cds.
JD209506 - Sequence 190530 from Patent EP1572962.
JD113494 - Sequence 94518 from Patent EP1572962.
JD317236 - Sequence 298260 from Patent EP1572962.
JD458920 - Sequence 439944 from Patent EP1572962.
JD361881 - Sequence 342905 from Patent EP1572962.
JD176090 - Sequence 157114 from Patent EP1572962.
JD395365 - Sequence 376389 from Patent EP1572962.
JD469335 - Sequence 450359 from Patent EP1572962.
AK023854 - Homo sapiens cDNA FLJ13792 fis, clone THYRO1000072, weakly similar to MYOSIN LIGHT CHAIN KINASE, SMOOTH MUSCLE AND NON-MUSCLE ISOZYMES (EC 2.7.1.117).
EF063637 - Homo sapiens obscurin-like 1 isoform C (OBSL1) mRNA, complete cds.
AK299261 - Homo sapiens cDNA FLJ51283 complete cds, moderately similar to Obscurin-like protein 1 precursor.
AF035292 - Homo sapiens clone 23584 mRNA sequence.
BC061909 - Homo sapiens obscurin-like 1, mRNA (cDNA clone IMAGE:4413820), complete cds.
AK025946 - Homo sapiens cDNA: FLJ22293 fis, clone HRC04421, highly similar to AF035292 Homo sapiens clone 23584 mRNA sequence.
BC007201 - Homo sapiens obscurin-like 1, mRNA (cDNA clone IMAGE:2961284), partial cds.
KJ902335 - Synthetic construct Homo sapiens clone ccsbBroadEn_11729 OBSL1 gene, encodes complete protein.
JD270757 - Sequence 251781 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75147 (Reactome details) participates in the following event(s):

R-HSA-8956050 NEDD8-CUL9:RBX1 binds CUL7:CCDC8:OBSL1
R-HSA-8951664 Neddylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A0A024R468, A4KVA4, A4KVA5, ENST00000404537.1, ENST00000404537.2, ENST00000404537.3, ENST00000404537.4, ENST00000404537.5, KIAA0657, NM_015311, O75147, OBSL1 , OBSL1_HUMAN, Q96IW3, S4R3M6, uc319cre.1, uc319cre.2
UCSC ID: ENST00000404537.6_8
RefSeq Accession: NM_015311.3
Protein: O75147 (aka OBSL1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene OBSL1:
gr_3ms (Three M Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.