Human Gene NOXA1 (ENST00000683555.1_4) from GENCODE V47lift37
  Description: NADPH oxidase activator 1, transcript variant 2 (from RefSeq NM_001256067.2)
Gencode Transcript: ENST00000683555.1_4
Gencode Gene: ENSG00000188747.9_8
Transcript (Including UTRs)
   Position: hg19 chr9:140,317,845-140,328,858 Size: 11,014 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr9:140,317,982-140,328,812 Size: 10,831 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:140,317,845-140,328,858)mRNA (may differ from genome)Protein (476 aa)
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NOXA1_HUMAN
DESCRIPTION: RecName: Full=NADPH oxidase activator 1; Short=NOX activator 1; AltName: Full=Antigen NY-CO-31; AltName: Full=NCF2-like protein; AltName: Full=P67phox-like factor; AltName: Full=p51-nox;
FUNCTION: Functions as an activator of NOX1, a superoxide- producing NADPH oxidase. Functions in the production of reactive oxygen species (ROS) which participate in a variety of biological processes including host defense, hormone biosynthesis, oxygen sensing and signal transduction. May also activate CYBB/gp91phox and NOX3.
SUBUNIT: NOX1, NOXA1, NOXO1, RAC1 and CYBA forms a functional multimeric complex supporting ROS production. Interaction with YWHAZ prevents the interaction of NOXA1 with NOXO1 and RAC1 and its targeting to membranes, hence reducing its ability to activate NOX1. Interacts (via N-terminus) with SH3PXD2A and SH3PXD2B; the interaction is direct.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane. Note=Translocation to membranes depends on NOXO1 or NCF1 and maybe RAC1.
TISSUE SPECIFICITY: Widely expressed. Detected in pancreas, liver, kidney, spleen, prostate, small intestine and colon.
DEVELOPMENTAL STAGE: Expressed in fetal kidney.
DOMAIN: The SH3 domain mediates interaction with NOXO1 and NCF1 and has autoregulatory function.
DOMAIN: The TPR repeats mediate interaction with RAC1.
PTM: Interaction with YWHAZ depends on phosphorylation by PKA.
SIMILARITY: Belongs to the NCF2/NOXA1 family.
SIMILARITY: Contains 1 OPR domain.
SIMILARITY: Contains 1 SH3 domain.
SIMILARITY: Contains 4 TPR repeats.
SEQUENCE CAUTION: Sequence=AAY16126.1; Type=Frameshift; Positions=305;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.40137-0.434 Picture PostScript Text
3' UTR -2.7046-0.059 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000270 - OPR_PB1
IPR000108 - p67phox
IPR001452 - SH3_domain
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR013105 - TPR_2
IPR019734 - TPR_repeat

Pfam Domains:
PF00018 - SH3 domain
PF00564 - PB1 domain
PF07721 - Tetratricopeptide repeat
PF13176 - Tetratricopeptide repeat

SCOP Domains:
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like
50044 - SH3-domain
54277 - CAD & PB1 domains

ModBase Predicted Comparative 3D Structure on Q86UR1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0016176 superoxide-generating NADPH oxidase activator activity
GO:0017124 SH3 domain binding
GO:0019899 enzyme binding
GO:0048365 Rac GTPase binding

Biological Process:
GO:0006801 superoxide metabolic process
GO:0010310 regulation of hydrogen peroxide metabolic process
GO:0043085 positive regulation of catalytic activity
GO:0060263 regulation of respiratory burst

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0043020 NADPH oxidase complex


-  Descriptions from all associated GenBank mRNAs
  BC041594 - Homo sapiens NADPH oxidase activator 1, mRNA (cDNA clone MGC:52464 IMAGE:5442630), complete cds.
HW061185 - JP 2012529430-A/60: METHODS FOR TREATING CHRONIC KIDNEY DISEASE.
JA482144 - Sequence 127 from Patent WO2011072091.
JB251993 - Sequence 60 from Patent EP2440214.
JE980436 - Sequence 127 from Patent EP2862929.
LP764892 - Sequence 60 from Patent EP3276004.
BC110840 - Homo sapiens NADPH oxidase activator 1, mRNA (cDNA clone MGC:131800 IMAGE:5759212), complete cds.
AB095031 - Homo sapiens NCF2-like mRNA for p67phox-like factor, complete cds.
AY927790 - Homo sapiens truncated NADPH oxidase activator 1 mRNA, complete cds.
AY927791 - Homo sapiens inhibitory NADPH oxidase activator 1 mRNA, complete cds.
CU692004 - Synthetic construct Homo sapiens gateway clone IMAGE:100022460 5' read NOXA1 mRNA.
KJ893139 - Synthetic construct Homo sapiens clone ccsbBroadEn_02533 NOXA1 gene, encodes complete protein.
AY255769 - Homo sapiens NADPH oxidase activator 1 (NOXA1) mRNA, complete cds.
AK098341 - Homo sapiens cDNA FLJ25475 fis, clone CBL02130.
AK055812 - Homo sapiens cDNA FLJ31250 fis, clone KIDNE2005336, weakly similar to Homo sapiens antigen NY-CO-31 (NY-CO-31) mRNA.
AF039697 - Homo sapiens antigen NY-CO-31 (NY-CO-31) mRNA, partial cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q86UR1 (Reactome details) participates in the following event(s):

R-HSA-5668714 RAC1:GTP binds NOX1 complex
R-HSA-5668735 RAC1:GTP binds NOX3 complex
R-HSA-5668718 NOX1 complex:RAC1:GTP generates superoxide from oxygen
R-HSA-5668731 NOX3 complex:RAC1:GTP generates superoxide from oxygen
R-HSA-5668599 RHO GTPases Activate NADPH Oxidases
R-HSA-195258 RHO GTPase Effectors
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001256067, NOXA1_HUMAN, O60533, P51NOX, Q29VU9, Q29VV0, Q2TAM1, Q86UR1, Q8IUS3, uc330lom.1, uc330lom.2
UCSC ID: ENST00000683555.1_4
RefSeq Accession: NM_001256067.2
Protein: Q86UR1 (aka NOXA1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.