Human Gene NFKBIZ (ENST00000326172.9_8) from GENCODE V47lift37
  Description: NFKB inhibitor zeta, transcript variant 1 (from RefSeq NM_031419.4)
Gencode Transcript: ENST00000326172.9_8
Gencode Gene: ENSG00000144802.11_14
Transcript (Including UTRs)
   Position: hg19 chr3:101,568,358-101,579,866 Size: 11,509 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr3:101,568,473-101,578,215 Size: 9,743 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:101,568,358-101,579,866)mRNA (may differ from genome)Protein (718 aa)
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IKBZ_HUMAN
DESCRIPTION: RecName: Full=NF-kappa-B inhibitor zeta; AltName: Full=I-kappa-B-zeta; Short=IkB-zeta; Short=IkappaBzeta; AltName: Full=IL-1 inducible nuclear ankyrin-repeat protein; Short=INAP; AltName: Full=Molecule possessing ankyrin repeats induced by lipopolysaccharide; Short=MAIL;
FUNCTION: Involved in regulation of NF-kappa-B transcription factor complexes. Inhibits NF-kappa-B activity without affecting its nuclear translocation upon stimulation. Inhibits DNA-binding of RELA and NFKB1/p50, and of the NF-kappa-B p65-p50 heterodimer and the NF-kappa-B p50-p50 homodimer. Seems also to activate NF- kappa-B-mediated transcription. In vitro, upon association with NFKB1/p50 has transcriptional activation activity and, together with NFKB1/p50 and RELA, is recruited to LCN2 promoters. Promotes transcription of LCN2 and DEFB4. Is recruited to IL-6 promoters and activates IL-6 but decreases TNF-alpha production in response to LPS. Seems to be involved in the induction of inflammatory genes activated through TLR/IL-1 receptor signaling. May promote apoptosis (By similarity).
SUBUNIT: Interacts with NFKB1/p50. Interacts with RELA.
SUBCELLULAR LOCATION: Nucleus. Note=Aggregated in dot-like structures. Colocalizes with NCOR2.
TISSUE SPECIFICITY: Expressed at high levels in peripheral blood leukocytes and lung, at moderate levels in liver, placenta, and at low levels in spleen, kidney, skeletal muscle and heart.
INDUCTION: By TNF, IL1/interleukin-1 and bacterial lipopolysaccharides (LPS).
SIMILARITY: Contains 7 ANK repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NFKBIZ
Diseases sorted by gene-association score: myxoid liposarcoma (7), brain glioblastoma multiforme (6), hypersensitivity syndrome, carbamazepine-induced (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.06 RPKM in Fallopian Tube
Total median expression: 560.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -49.20115-0.428 Picture PostScript Text
3' UTR -418.301651-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom

Pfam Domains:
PF00023 - Ankyrin repeat
PF12796 - Ankyrin repeats (3 copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat

ModBase Predicted Comparative 3D Structure on Q9BYH8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003712 transcription cofactor activity
GO:0005515 protein binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006954 inflammatory response
GO:0050852 T cell receptor signaling pathway
GO:2000321 positive regulation of T-helper 17 cell differentiation

Cellular Component:
GO:0005634 nucleus
GO:0016607 nuclear speck
GO:0036464 cytoplasmic ribonucleoprotein granule


-  Descriptions from all associated GenBank mRNAs
  AB074898 - Homo sapiens IkappaB-zeta mRNA, 5' untranslated region.
DQ224339 - Homo sapiens Ikappa B-zeta variant 3 mRNA, complete cds, alternatively spliced.
AF548362 - Homo sapiens MAIL-S mRNA, complete cds; alternatively spliced.
AK054787 - Homo sapiens cDNA FLJ30225 fis, clone BRACE2001855, highly similar to Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta (NFKBIZ), transcript variant 1, mRNA.
AK091782 - Homo sapiens cDNA FLJ34463 fis, clone HLUNG2003042, moderately similar to Mus musculus mRNA for MAIL.
AX747180 - Sequence 705 from Patent EP1308459.
BC060800 - Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta, mRNA (cDNA clone MGC:71609 IMAGE:30344780), complete cds.
AB037925 - Homo sapiens MAIL mRNA, complete cds.
JD138623 - Sequence 119647 from Patent EP1572962.
JD194338 - Sequence 175362 from Patent EP1572962.
BC014587 - Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta, mRNA (cDNA clone IMAGE:2967644).
JD109450 - Sequence 90474 from Patent EP1572962.
JD352190 - Sequence 333214 from Patent EP1572962.
JD159612 - Sequence 140636 from Patent EP1572962.
JD493536 - Sequence 474560 from Patent EP1572962.
JD502688 - Sequence 483712 from Patent EP1572962.
JD298354 - Sequence 279378 from Patent EP1572962.
JD137997 - Sequence 119021 from Patent EP1572962.
JD077954 - Sequence 58978 from Patent EP1572962.
JD431836 - Sequence 412860 from Patent EP1572962.
JD327287 - Sequence 308311 from Patent EP1572962.
JD294465 - Sequence 275489 from Patent EP1572962.
JD026326 - Sequence 7350 from Patent EP1572962.
JD238966 - Sequence 219990 from Patent EP1572962.
JD031961 - Sequence 12985 from Patent EP1572962.
JD505074 - Sequence 486098 from Patent EP1572962.
JD359554 - Sequence 340578 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KNR2, D3DN54, ENST00000326172.1, ENST00000326172.2, ENST00000326172.3, ENST00000326172.4, ENST00000326172.5, ENST00000326172.6, ENST00000326172.7, ENST00000326172.8, IKBZ, IKBZ_HUMAN, INAP, MAIL , NM_031419, Q8IUL4, Q8NAZ8, Q9BYH8, uc317rzt.1, uc317rzt.2
UCSC ID: ENST00000326172.9_8
RefSeq Accession: NM_031419.4
Protein: Q9BYH8 (aka IKBZ_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.