Human Gene NDUFAF4 (ENST00000316149.8_7) from GENCODE V47lift37
  Description: NADH:ubiquinone oxidoreductase complex assembly factor 4 (from RefSeq NM_014165.4)
Gencode Transcript: ENST00000316149.8_7
Gencode Gene: ENSG00000123545.6_9
Transcript (Including UTRs)
   Position: hg19 chr6:97,337,191-97,345,767 Size: 8,577 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr6:97,338,980-97,345,677 Size: 6,698 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:97,337,191-97,345,767)mRNA (may differ from genome)Protein (175 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: NDUF4_HUMAN
DESCRIPTION: RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4; AltName: Full=Hormone-regulated proliferation-associated protein of 20 kDa;
FUNCTION: Involved in the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). May be involved in cell proliferation and survival of hormone-dependent tumor cells. May be a regulator of breast tumor cell invasion.
SUBUNIT: Binds calmodulin. Interacts with NDUFAF3.
SUBCELLULAR LOCATION: Mitochondrion.
INDUCTION: Expression is low in quiescent cells and is induced in exponentially proliferating cultures. Expression is also induced when prolactin is added to stationary cells. Induced by dietary differentiating agents such as butyrate and retinoic acid.
PTM: Phosphorylated on serine. Prolactin stimulate serine phosphorylation (By similarity).
DISEASE: Defects in NDUFAF4 are a cause of mitochondrial complex I deficiency (MT-C1D) [MIM:252010]. A disorder of the mitochondrial respiratory chain that causes a wide range of clinical disorders, from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease.
MISCELLANEOUS: Elevated levels in highly invasive breast cancer cells and mammary tumors. Knockdown of endogenous C6orf66 in MDA- MB-231 cells inhibits MMP-9 secretion.
SIMILARITY: Belongs to the NDUFAF4 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NDUFAF4
Diseases sorted by gene-association score: mitochondrial complex i deficiency* (602), leigh syndrome (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.36 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 343.95 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.2090-0.369 Picture PostScript Text
3' UTR -420.601789-0.235 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009622 - UPF0240

Pfam Domains:
PF06784 - Uncharacterised protein family (UPF0240)

ModBase Predicted Comparative 3D Structure on Q9P032
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005516 calmodulin binding

Biological Process:
GO:0010257 NADH dehydrogenase complex assembly
GO:0032981 mitochondrial respiratory chain complex I assembly

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0031966 mitochondrial membrane


-  Descriptions from all associated GenBank mRNAs
  LF206402 - JP 2014500723-A/13905: Polycomb-Associated Non-Coding RNAs.
LF354033 - JP 2014500723-A/161536: Polycomb-Associated Non-Coding RNAs.
LF354032 - JP 2014500723-A/161535: Polycomb-Associated Non-Coding RNAs.
LF354031 - JP 2014500723-A/161534: Polycomb-Associated Non-Coding RNAs.
AK026245 - Homo sapiens cDNA: FLJ22592 fis, clone HSI03180.
BC039464 - Homo sapiens chromosome 6 open reading frame 66, mRNA (cDNA clone MGC:49892 IMAGE:4388671), complete cds.
BC018802 - Homo sapiens chromosome 6 open reading frame 66, mRNA (cDNA clone IMAGE:4642993).
AF161474 - Homo sapiens HSPC125 mRNA, complete cds.
AF060508 - Homo sapiens clone 015g09 My013 protein mRNA, complete cds.
AK311850 - Homo sapiens cDNA, FLJ92115.
HQ257923 - Synthetic construct Homo sapiens clone IMAGE:100072232 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 (NDUFAF4) gene, encodes complete protein.
KJ898709 - Synthetic construct Homo sapiens clone ccsbBroadEn_08103 NDUFAF4 gene, encodes complete protein.
KR711026 - Synthetic construct Homo sapiens clone CCSBHm_00019269 NDUFAF4 (NDUFAF4) mRNA, encodes complete protein.
LF354030 - JP 2014500723-A/161533: Polycomb-Associated Non-Coding RNAs.
MA441979 - JP 2018138019-A/13905: Polycomb-Associated Non-Coding RNAs.
MA589610 - JP 2018138019-A/161536: Polycomb-Associated Non-Coding RNAs.
MA589609 - JP 2018138019-A/161535: Polycomb-Associated Non-Coding RNAs.
MA589608 - JP 2018138019-A/161534: Polycomb-Associated Non-Coding RNAs.
MA589607 - JP 2018138019-A/161533: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9P032 (Reactome details) participates in the following event(s):

R-HSA-6799203 IP subcomplex binds NDUFAF3, NDUFAF4, TIMMDC1 to form Intermediate 1
R-HSA-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-HSA-6799178 Intermediate 1 binds HP subcomplex to form Intermediate 2
R-HSA-6799191 Intermediate 2 binds MT-ND1:NDUFAF5:NDUFAF6 to form a 315kDa subcomplex
R-HSA-6799202 The 315kDa subcomplex binds the 370kDa subcomplex to form the 550kDa complex
R-HSA-6799197 ND4, ND5 bind the 550kDa complex to form the 815kDa complex
R-HSA-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-HSA-6799198 Complex I biogenesis
R-HSA-611105 Respiratory electron transport
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2R4J5, C6orf66 , ENST00000316149.1, ENST00000316149.2, ENST00000316149.3, ENST00000316149.4, ENST00000316149.5, ENST00000316149.6, ENST00000316149.7, HRPAP20 , HSPC125, My013, NDUF4_HUMAN, NDUFAF4 , NM_014165, Q9P032, uc317pyo.1, uc317pyo.2
UCSC ID: ENST00000316149.8_7
RefSeq Accession: NM_014165.4
Protein: Q9P032 (aka NDUF4_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.