Human Gene NAV1 (ENST00000685211.1_7) from GENCODE V47lift37
  Description: neuron navigator 1, transcript variant 9 (from RefSeq NM_001389617.1)
Gencode Transcript: ENST00000685211.1_7
Gencode Gene: ENSG00000134369.17_15
Transcript (Including UTRs)
   Position: hg19 chr1:201,508,255-201,796,097 Size: 287,843 Total Exon Count: 34 Strand: +
Coding Region
   Position: hg19 chr1:201,592,013-201,789,060 Size: 197,048 Coding Exon Count: 32 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:201,508,255-201,796,097)mRNA (may differ from genome)Protein (2164 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NAV1
Diseases sorted by gene-association score: myotonia congenita (6), long qt syndrome-3 (6), brugada syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -174.80359-0.487 Picture PostScript Text
3' UTR -2169.907037-0.308 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AY043013 - Homo sapiens neuron navigator 1 (NAV1) mRNA, complete cds.
BC117683 - Homo sapiens neuron navigator 1, mRNA (cDNA clone IMAGE:40071140), partial cds.
BC156464 - Synthetic construct Homo sapiens clone IMAGE:100062980, MGC:190650 neuron navigator 1 (NAV1) mRNA, encodes complete protein.
BC172534 - Synthetic construct Homo sapiens clone IMAGE:100069228, MGC:199239 neuron navigator 1 (NAV1) mRNA, encodes complete protein.
AJ488101 - Homo sapiens partial mRNA for steerin1 protein (STEERIN1 gene).
AB032977 - Homo sapiens mRNA for KIAA1151 protein, partial cds.
AK056158 - Homo sapiens cDNA FLJ31596 fis, clone NT2RI2002530, highly similar to Homo sapiens neuron navigator 1 (NAV1), mRNA.
BX648460 - Homo sapiens mRNA; cDNA DKFZp781D0314 (from clone DKFZp781D0314).
BC069250 - Homo sapiens cDNA clone IMAGE:5018707, containing frame-shift errors.
DL491574 - Novel nucleic acids.
DL490175 - Novel nucleic acids.
JD151890 - Sequence 132914 from Patent EP1572962.
DL491565 - Novel nucleic acids.
DL490166 - Novel nucleic acids.
JD517280 - Sequence 498304 from Patent EP1572962.
AK022631 - Homo sapiens cDNA FLJ12569 fis, clone NT2RM4000887.
AB033039 - Homo sapiens mRNA for KIAA1213 protein, partial cds.
CR936811 - Homo sapiens mRNA; cDNA DKFZp781D1169 (from clone DKFZp781D1169).
BC007523 - Homo sapiens neuron navigator 1, mRNA (cDNA clone IMAGE:3347127), complete cds.
AK024265 - Homo sapiens cDNA FLJ14203 fis, clone NT2RP3003121.
JD055505 - Sequence 36529 from Patent EP1572962.
JD417290 - Sequence 398314 from Patent EP1572962.
JD383477 - Sequence 364501 from Patent EP1572962.
JD256363 - Sequence 237387 from Patent EP1572962.
JF432854 - Synthetic construct Homo sapiens clone IMAGE:100074176 neuron navigator 1 (NAV1) gene, encodes complete protein.
KJ895097 - Synthetic construct Homo sapiens clone ccsbBroadEn_04491 NAV1 gene, encodes complete protein.
AK022622 - Homo sapiens cDNA FLJ12560 fis, clone NT2RM4000796.
AL133664 - Homo sapiens mRNA; cDNA DKFZp434O2321 (from clone DKFZp434O2321).
JD500588 - Sequence 481612 from Patent EP1572962.
JD464698 - Sequence 445722 from Patent EP1572962.
JD150452 - Sequence 131476 from Patent EP1572962.
JD254094 - Sequence 235118 from Patent EP1572962.
JD248224 - Sequence 229248 from Patent EP1572962.
JD064813 - Sequence 45837 from Patent EP1572962.
JD388110 - Sequence 369134 from Patent EP1572962.
JD440291 - Sequence 421315 from Patent EP1572962.
JD317959 - Sequence 298983 from Patent EP1572962.
JD178173 - Sequence 159197 from Patent EP1572962.
JD218914 - Sequence 199938 from Patent EP1572962.
JD218757 - Sequence 199781 from Patent EP1572962.
JD262573 - Sequence 243597 from Patent EP1572962.
AF086348 - Homo sapiens full length insert cDNA clone ZD62D10.
JD489341 - Sequence 470365 from Patent EP1572962.
JD296296 - Sequence 277320 from Patent EP1572962.
JD343109 - Sequence 324133 from Patent EP1572962.
JD426306 - Sequence 407330 from Patent EP1572962.
JD521293 - Sequence 502317 from Patent EP1572962.
JD414220 - Sequence 395244 from Patent EP1572962.
JD098027 - Sequence 79051 from Patent EP1572962.
JD329455 - Sequence 310479 from Patent EP1572962.
JD415893 - Sequence 396917 from Patent EP1572962.
JD332577 - Sequence 313601 from Patent EP1572962.
JD543787 - Sequence 524811 from Patent EP1572962.
JD437170 - Sequence 418194 from Patent EP1572962.
JD043312 - Sequence 24336 from Patent EP1572962.
JD501696 - Sequence 482720 from Patent EP1572962.
JD090091 - Sequence 71115 from Patent EP1572962.
JD299950 - Sequence 280974 from Patent EP1572962.
JD456092 - Sequence 437116 from Patent EP1572962.
JD092675 - Sequence 73699 from Patent EP1572962.
JD377328 - Sequence 358352 from Patent EP1572962.
JD188347 - Sequence 169371 from Patent EP1572962.
JD109528 - Sequence 90552 from Patent EP1572962.
JD348235 - Sequence 329259 from Patent EP1572962.
JD166538 - Sequence 147562 from Patent EP1572962.
JD543629 - Sequence 524653 from Patent EP1572962.
JD305217 - Sequence 286241 from Patent EP1572962.
JD265576 - Sequence 246600 from Patent EP1572962.
JD327315 - Sequence 308339 from Patent EP1572962.
JD411720 - Sequence 392744 from Patent EP1572962.
JD380238 - Sequence 361262 from Patent EP1572962.
JD144479 - Sequence 125503 from Patent EP1572962.
JD237145 - Sequence 218169 from Patent EP1572962.
JD385395 - Sequence 366419 from Patent EP1572962.
JD279658 - Sequence 260682 from Patent EP1572962.
JD119608 - Sequence 100632 from Patent EP1572962.
JD357800 - Sequence 338824 from Patent EP1572962.
JD172465 - Sequence 153489 from Patent EP1572962.
JD371747 - Sequence 352771 from Patent EP1572962.
JD078778 - Sequence 59802 from Patent EP1572962.
JD390400 - Sequence 371424 from Patent EP1572962.
JD051507 - Sequence 32531 from Patent EP1572962.
JD048051 - Sequence 29075 from Patent EP1572962.
JD258233 - Sequence 239257 from Patent EP1572962.
JD095603 - Sequence 76627 from Patent EP1572962.
JD048548 - Sequence 29572 from Patent EP1572962.
JD096873 - Sequence 77897 from Patent EP1572962.
JD547983 - Sequence 529007 from Patent EP1572962.
JD236033 - Sequence 217057 from Patent EP1572962.
JD237485 - Sequence 218509 from Patent EP1572962.
JD503600 - Sequence 484624 from Patent EP1572962.
JD557072 - Sequence 538096 from Patent EP1572962.
JD239982 - Sequence 221006 from Patent EP1572962.
JD303976 - Sequence 285000 from Patent EP1572962.
JD410157 - Sequence 391181 from Patent EP1572962.
JD486507 - Sequence 467531 from Patent EP1572962.
JD194055 - Sequence 175079 from Patent EP1572962.
JD509428 - Sequence 490452 from Patent EP1572962.
JD225723 - Sequence 206747 from Patent EP1572962.
JD246244 - Sequence 227268 from Patent EP1572962.
JD135604 - Sequence 116628 from Patent EP1572962.
JD427429 - Sequence 408453 from Patent EP1572962.
JD282475 - Sequence 263499 from Patent EP1572962.
JD538911 - Sequence 519935 from Patent EP1572962.
JD246080 - Sequence 227104 from Patent EP1572962.
JD073340 - Sequence 54364 from Patent EP1572962.
AK091567 - Homo sapiens cDNA FLJ34248 fis, clone FCBBF4000446.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A8I5KSE4, A0A8I5KSE4_HUMAN, NAV1 , NM_001389617, uc330nxv.1, uc330nxv.2
UCSC ID: ENST00000685211.1_7
RefSeq Accession: NM_001389617.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.