Human Gene MYO10 (ENST00000513610.6_10) from GENCODE V47lift37
  Description: myosin X (from RefSeq NM_012334.3)
Gencode Transcript: ENST00000513610.6_10
Gencode Gene: ENSG00000145555.15_14
Transcript (Including UTRs)
   Position: hg19 chr5:16,662,016-16,936,397 Size: 274,382 Total Exon Count: 41 Strand: -
Coding Region
   Position: hg19 chr5:16,666,801-16,935,917 Size: 269,117 Coding Exon Count: 41 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:16,662,016-16,936,397)mRNA (may differ from genome)Protein (2058 aa)
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-  Comments and Description Text from UniProtKB
  ID: MYO10_HUMAN
DESCRIPTION: RecName: Full=Unconventional myosin-X; AltName: Full=Unconventional myosin-10;
FUNCTION: Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. MYO10 binds to actin filaments and actin bundles and functions as plus end-directed motor. The tail domain binds to membranous compartments containing phosphatidylinositol 3,4,5-trisphosphate or integrins, and mediates cargo transport along actin filaments. Regulates cell shape, cell spreading and cell adhesion. Stimulates the formation and elongation of filopodia. May play a role in neurite outgrowth and axon guidance. Plays a role in formation of the podosome belt in osteoclasts (By similarity).
SUBUNIT: Monomer, when in an inactive confomation in the cytosol. Homodimer in its active, membrane-bound conformation. Interacts with CALM. Interacts with ECM29. Interacts with NEO1. Interacts with ITGB1 and ITGB3 (By similarity). Interacts with DCC and ITGB5; the presence of DCC inhibits ITGB5 binding. Interacts with tubulin; ITGB5 or DCC binding inhibits tubulin binding.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Cell projection, lamellipodium. Cell projection, ruffle. Cytoplasm, cytoskeleton. Cell projection, filopodium tip. Cytoplasm, cell cortex. Cell projection, filopodium membrane; Peripheral membrane protein (By similarity). Note=May be in an inactive, monomeric conformation in the cytosol. Detected in cytoplasmic punctae and in cell projections. Colocalizes with actin fibers. Undergoes forward and rearward movements within filopodia. Interacts with microtubules.
TISSUE SPECIFICITY: Ubiquitous.
DOMAIN: Interaction between the motor domain and the tail leads to an inactive, monomeric conformation. Phospholipid binding via the PH domains leads to the formation of the active, dimeric form of the protein and strongly increases actin-dependent ATPase activity and motor activity (By similarity).
DOMAIN: Interacts with membranes containing phosphatidylinositol- 3,4,5-trisphosphate via the PH domains (By similarity).
SIMILARITY: Contains 1 FERM domain.
SIMILARITY: Contains 3 IQ domains.
SIMILARITY: Contains 1 myosin head-like domain.
SIMILARITY: Contains 1 MyTH4 domain.
SIMILARITY: Contains 2 PH domains.
CAUTION: Represents a unconventional myosin. This protein should not be confused with the conventional myosin-10 (MYH10).
SEQUENCE CAUTION: Sequence=BAA34519.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.26 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 358.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -229.10480-0.477 Picture PostScript Text
3' UTR -1573.604785-0.329 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019749 - Band_41_domain
IPR014352 - FERM/acyl-CoA-bd_prot_3-hlx
IPR019748 - FERM_central
IPR000299 - FERM_domain
IPR000048 - IQ_motif_EF-hand-BS
IPR001609 - Myosin_head_motor_dom
IPR000857 - MyTH4_dom
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology

Pfam Domains:
PF00063 - Myosin head (motor domain)
PF00169 - PH domain
PF00373 - FERM central domain
PF00612 - IQ calmodulin-binding motif
PF00784 - MyTH4 domain
PF00788 - Ras association (RalGDS/AF-6) domain
PF14593 - PH domain
PF15409 - Pleckstrin homology domain
PF16735 - Unconventional myosin-X coiled coil domain
PF18597 - Myosin X N-terminal SH3 domain

SCOP Domains:
47027 - Acyl-CoA binding protein
47031 - Second domain of FERM
103657 - BAR/IMD domain-like
50729 - PH domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like
54236 - Ubiquitin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2LW9 - NMR MuPIT 3AU4 - X-ray MuPIT 3AU5 - X-ray MuPIT 3PZD - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9HD67
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0003779 actin binding
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding
GO:0008017 microtubule binding
GO:0030507 spectrin binding
GO:0030898 actin-dependent ATPase activity
GO:0051015 actin filament binding
GO:0060002 plus-end directed microfilament motor activity

Biological Process:
GO:0007018 microtubule-based movement
GO:0007165 signal transduction
GO:0008360 regulation of cell shape
GO:0022409 positive regulation of cell-cell adhesion
GO:0030705 cytoskeleton-dependent intracellular transport
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0051489 regulation of filopodium assembly

Cellular Component:
GO:0001726 ruffle
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005938 cell cortex
GO:0016020 membrane
GO:0016459 myosin complex
GO:0030027 lamellipodium
GO:0030175 filopodium
GO:0031527 filopodium membrane
GO:0032433 filopodium tip
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0043025 neuronal cell body


-  Descriptions from all associated GenBank mRNAs
  BC150285 - Homo sapiens myosin X, mRNA (cDNA clone MGC:166908 IMAGE:8860110), complete cds.
AF247457 - Homo sapiens myosin X (MYO10) mRNA, complete cds.
AF234532 - Homo sapiens myosin X (MYO10) mRNA, complete cds.
AB018342 - Homo sapiens KIAA0799 mRNA for KIAA0799 protein.
BC137168 - Homo sapiens myosin X, mRNA (cDNA clone MGC:168788 IMAGE:9021165), complete cds.
AB384526 - Synthetic construct DNA, clone: pF1KA0799, Homo sapiens MYO10 gene for myosin-X, complete cds, without stop codon, in Flexi system.
AF132021 - Homo sapiens myosin X (MYO10) mRNA, partial cds.
BC014956 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:4872821).
AK125246 - Homo sapiens cDNA FLJ43256 fis, clone HELAC2000158, highly similar to Homo sapiens myosin X (MYO10) mRNA.
BC071965 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:6253993), partial cds.
BC094838 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:6110036), partial cds.
BC032669 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:5539967), with apparent retained intron.
BC108736 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:6164790), complete cds.
BC050682 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:6150628), complete cds.
BC041694 - Homo sapiens myosin X, mRNA (cDNA clone IMAGE:5547594), complete cds.
KJ901590 - Synthetic construct Homo sapiens clone ccsbBroadEn_10984 MYO10 gene, encodes complete protein.
JD442748 - Sequence 423772 from Patent EP1572962.
JD531893 - Sequence 512917 from Patent EP1572962.
JD552411 - Sequence 533435 from Patent EP1572962.
JD021719 - Sequence 2743 from Patent EP1572962.
JD020223 - Sequence 1247 from Patent EP1572962.
JD031222 - Sequence 12246 from Patent EP1572962.
JD034925 - Sequence 15949 from Patent EP1572962.
JD346635 - Sequence 327659 from Patent EP1572962.
JD312154 - Sequence 293178 from Patent EP1572962.
JD346636 - Sequence 327660 from Patent EP1572962.
JD312155 - Sequence 293179 from Patent EP1572962.
AK074717 - Homo sapiens cDNA FLJ90236 fis, clone NT2RM2000589, moderately similar to Bos taurus myosin X, complete cds.
AK001501 - Homo sapiens cDNA FLJ10639 fis, clone NT2RP2005712, highly similar to Homo sapiens mRNA for KIAA0799 protein.
AL832428 - Homo sapiens mRNA; cDNA DKFZp762A083 (from clone DKFZp762A083).
JD212497 - Sequence 193521 from Patent EP1572962.
AF132022 - Homo sapiens myosin X (MYO10) mRNA, partial cds.
JD464175 - Sequence 445199 from Patent EP1572962.
JD377073 - Sequence 358097 from Patent EP1572962.
JD548670 - Sequence 529694 from Patent EP1572962.
JD333972 - Sequence 314996 from Patent EP1572962.
JD166325 - Sequence 147349 from Patent EP1572962.
JD327434 - Sequence 308458 from Patent EP1572962.
JD109368 - Sequence 90392 from Patent EP1572962.
JD522595 - Sequence 503619 from Patent EP1572962.
JD421753 - Sequence 402777 from Patent EP1572962.
JD137564 - Sequence 118588 from Patent EP1572962.
AK295630 - Homo sapiens cDNA FLJ58530 complete cds, highly similar to Myosin-10.
JD309681 - Sequence 290705 from Patent EP1572962.
AK295736 - Homo sapiens cDNA FLJ59307 complete cds, highly similar to Myosin-10.
JD537050 - Sequence 518074 from Patent EP1572962.
JD157195 - Sequence 138219 from Patent EP1572962.
AK316138 - Homo sapiens cDNA, FLJ79037 complete cds, highly similar to Myosin-10.
JD270411 - Sequence 251435 from Patent EP1572962.
JD055647 - Sequence 36671 from Patent EP1572962.
JD116008 - Sequence 97032 from Patent EP1572962.
JD152640 - Sequence 133664 from Patent EP1572962.
AK303459 - Homo sapiens cDNA FLJ58463 complete cds, highly similar to Myosin-10.
JD262917 - Sequence 243941 from Patent EP1572962.
JD104155 - Sequence 85179 from Patent EP1572962.
JD383108 - Sequence 364132 from Patent EP1572962.
AK025921 - Homo sapiens cDNA: FLJ22268 fis, clone HRC03178, highly similar to AF247457 Homo sapiens myosin X (MYO10) mRNA.
AK024719 - Homo sapiens cDNA: FLJ21066 fis, clone CAS01450, highly similar to AF247457 Homo sapiens myosin X (MYO10) mRNA.
AF184153 - Homo sapiens myosin X (MYO10) mRNA, partial cds.
JD095951 - Sequence 76975 from Patent EP1572962.
JD143337 - Sequence 124361 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HD67 (Reactome details) participates in the following event(s):

R-HSA-593672 Myosin-X binds DCC/Neogenin
R-HSA-1861595 Extension of pseudopodia by myosin-X in a PI3K dependent manner
R-HSA-373752 Netrin-1 signaling
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation
R-HSA-422475 Axon guidance
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-1266738 Developmental Biology
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A7E2D1, ENST00000513610.1, ENST00000513610.2, ENST00000513610.3, ENST00000513610.4, ENST00000513610.5, KIAA0799, MYO10_HUMAN, NM_012334, O94893, Q8IVX5, Q9HD67, Q9NYM7, Q9P110, Q9P111, Q9UHF6, uc323kkp.1, uc323kkp.2
UCSC ID: ENST00000513610.6_10
RefSeq Accession: NM_012334.3
Protein: Q9HD67 (aka MYO10_HUMAN or MY10_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.