Human Gene MYBL2 (ENST00000217026.5_4) from GENCODE V47lift37
  Description: MYB proto-oncogene like 2, transcript variant 1 (from RefSeq NM_002466.4)
Gencode Transcript: ENST00000217026.5_4
Gencode Gene: ENSG00000101057.16_7
Transcript (Including UTRs)
   Position: hg19 chr20:42,295,754-42,345,122 Size: 49,369 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr20:42,295,924-42,344,727 Size: 48,804 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:42,295,754-42,345,122)mRNA (may differ from genome)Protein (700 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MYBB_HUMAN
DESCRIPTION: RecName: Full=Myb-related protein B; Short=B-Myb; AltName: Full=Myb-like protein 2;
FUNCTION: Transcription factor involved in the regulation of cell survival, proliferation, and differentiation. Transactivates the expression of the CLU gene.
SUBUNIT: Component of the DREAM complex (also named LINC complex) at least composed of E2F4, E2F5, LIN9, LIN37, LIN52, LIN54, MYBL1, MYBL2, RBL1, RBL2, RBBP4, TFDP1 and TFDP2. The complex exists in quiescent cells where it represses cell cycle-dependent genes. It dissociates in S phase when LIN9, LIN37, LIN52 and LIN54 form a subcomplex that binds to MYBL22.
SUBCELLULAR LOCATION: Nucleus.
PTM: Phosphorylated by cyclin A/CDK2 during S-phase. Phosphorylation at Thr-520 is probably involved in transcriptional activity.
SIMILARITY: Contains 3 HTH myb-type DNA-binding domains.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/MYBL2ID41469ch20q13.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MYBL2
Diseases sorted by gene-association score: paraneoplastic cerebellar degeneration (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 65.78 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 136.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -111.60170-0.656 Picture PostScript Text
3' UTR -165.50395-0.419 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015395 - C-myb_C
IPR009057 - Homeodomain-like
IPR017930 - Myb_dom
IPR001005 - SANT/Myb

Pfam Domains:
PF00249 - Myb-like DNA-binding domain
PF09316 - C-myb, C-terminal
PF13921 - Myb-like DNA-binding domain

SCOP Domains:
46689 - Homeodomain-like

ModBase Predicted Comparative 3D Structure on P10244
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0030154 cell differentiation
GO:0043525 positive regulation of neuron apoptotic process
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051726 regulation of cell cycle
GO:0090307 mitotic spindle assembly
GO:1990830 cellular response to leukemia inhibitory factor

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0031523 Myb complex


-  Descriptions from all associated GenBank mRNAs
  BC007585 - Homo sapiens v-myb myeloblastosis viral oncogene homolog (avian)-like 2, mRNA (cDNA clone MGC:15600 IMAGE:3162656), complete cds.
AK314791 - Homo sapiens cDNA, FLJ95661, Homo sapiens v-myb myeloblastosis viral oncogene homolog (avian)-like 2 (MYBL2), mRNA.
AK303249 - Homo sapiens cDNA FLJ57697 complete cds, highly similar to Myb-related protein B.
BC053555 - Homo sapiens v-myb myeloblastosis viral oncogene homolog (avian)-like 2, mRNA (cDNA clone MGC:61523 IMAGE:6140320), complete cds.
X13293 - Human mRNA for B-myb gene.
AB528519 - Synthetic construct DNA, clone: pF1KB6184, Homo sapiens MYBL2 gene for v-myb myeloblastosis viral oncogene homolog (avian)-like 2, without stop codon, in Flexi system.
DQ893522 - Synthetic construct clone IMAGE:100006152; FLH194963.01X; RZPDo839G1180D v-myb myeloblastosis viral oncogene homolog (avian)-like 2 (MYBL2) gene, encodes complete protein.
DQ895945 - Synthetic construct Homo sapiens clone IMAGE:100010405; FLH194959.01L; RZPDo839G1170D v-myb myeloblastosis viral oncogene homolog (avian)-like 2 (MYBL2) gene, encodes complete protein.
AK223482 - Homo sapiens mRNA for MYB-related protein B variant, clone: FCC119C09.
JD125939 - Sequence 106963 from Patent EP1572962.
CQ873808 - Sequence 227 from Patent WO2004076622.
DD413645 - Regulation of Mammalian Cells.
CQ873840 - Sequence 259 from Patent WO2004076622.
DD413677 - Regulation of Mammalian Cells.
BX647151 - Homo sapiens mRNA; cDNA DKFZp686B24223 (from clone DKFZp686B24223).
JD221135 - Sequence 202159 from Patent EP1572962.
JD164901 - Sequence 145925 from Patent EP1572962.
JD383509 - Sequence 364533 from Patent EP1572962.
JD318390 - Sequence 299414 from Patent EP1572962.
JD464826 - Sequence 445850 from Patent EP1572962.
JD078817 - Sequence 59841 from Patent EP1572962.
JD279590 - Sequence 260614 from Patent EP1572962.
JD189183 - Sequence 170207 from Patent EP1572962.
JD098596 - Sequence 79620 from Patent EP1572962.
JD343176 - Sequence 324200 from Patent EP1572962.
JD386532 - Sequence 367556 from Patent EP1572962.
JD484294 - Sequence 465318 from Patent EP1572962.
JD151283 - Sequence 132307 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P10244 (Reactome details) participates in the following event(s):

R-HSA-4088306 FOXM1 binds PLK1 promoter
R-HSA-4088307 FOXM1 binds CCNB1 promoter
R-HSA-4088309 FOXM1 binds CCNB2 promoter
R-HSA-156711 Polo-like kinase mediated events
R-HSA-8869496 TFAP2A acts as a transcriptional repressor during retinoic acid induced cell differentiation
R-HSA-1362300 Transcription of E2F targets under negative control by p107 (RBL1) and p130 (RBL2) in complex with HDAC1
R-HSA-69275 G2/M Transition
R-HSA-8864260 Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors
R-HSA-1538133 G0 and Early G1
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-212436 Generic Transcription Pathway
R-HSA-453279 Mitotic G1-G1/S phases
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-1640170 Cell Cycle
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBS5, B7Z8D9, BMYB, ENST00000217026.1, ENST00000217026.2, ENST00000217026.3, ENST00000217026.4, F8W6N6, MYBB_HUMAN, NM_002466, P10244, Q53F07, uc317csn.1, uc317csn.2
UCSC ID: ENST00000217026.5_4
RefSeq Accession: NM_002466.4
Protein: P10244 (aka MYBB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.