Human Gene MOGS (ENST00000448666.7_11) from GENCODE V47lift37
  Description: mannosyl-oligosaccharide glucosidase, transcript variant 1 (from RefSeq NM_006302.3)
Gencode Transcript: ENST00000448666.7_11
Gencode Gene: ENSG00000115275.15_17
Transcript (Including UTRs)
   Position: hg19 chr2:74,688,184-74,692,509 Size: 4,326 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr2:74,688,402-74,692,374 Size: 3,973 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:74,688,184-74,692,509)mRNA (may differ from genome)Protein (837 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MOGS_HUMAN
DESCRIPTION: RecName: Full=Mannosyl-oligosaccharide glucosidase; EC=3.2.1.106; AltName: Full=Processing A-glucosidase I;
FUNCTION: Cleaves the distal alpha 1,2-linked glucose residue from the Glc(3)Man(9)GlcNAc(2) oligosaccharide precursor in a highly specific manner.
CATALYTIC ACTIVITY: Exohydrolysis of the non-reducing terminal glucose residues in the mannosyl-oligosaccharide Glc(3)Man(9)GlcNAc(2).
PATHWAY: Glycan metabolism; N-glycan degradation.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type II membrane protein.
DISEASE: Defects in MOGS are the cause of type IIb congenital disorder of glycosylation (CDGIIb) [MIM:606056]; also known as glucosidase I deficiency. CDGIIb is characterized by marked generalized hypotonia and hypomotility of the neonate, dysmorphic features, including a prominent occiput, short palpebral fissures, retrognathia, high arched palate, generalized edema, and hypoplastic genitalia. Symptoms of the infant included hepatomegaly, hypoventilation, feeding problems and seizures. The clinical course was progressive and the infant did not survive more than a few months.
SIMILARITY: Belongs to the glycosyl hydrolase 63 family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GCS1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MOGS
Diseases sorted by gene-association score: congenital disorder of glycosylation, type iib* (1550), synchronous multifocal osteogenic sarcoma (18), multifocal osteogenic sarcoma (12)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.97 RPKM in Stomach
Total median expression: 991.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -66.40135-0.492 Picture PostScript Text
3' UTR -66.20218-0.304 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008928 - 6-hairpin_glycosidase-like
IPR004888 - Glycoside_hydrolase_63

Pfam Domains:
PF03200 - Glycosyl hydrolase family 63 C-terminal domain
PF16923 - Glycosyl hydrolase family 63 N-terminal domain

SCOP Domains:
48208 - Six-hairpin glycosidases

ModBase Predicted Comparative 3D Structure on Q13724
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
  Ensembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004573 mannosyl-oligosaccharide glucosidase activity
GO:0015926 glucosidase activity
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds

Biological Process:
GO:0006457 protein folding
GO:0006487 protein N-linked glycosylation
GO:0008152 metabolic process
GO:0009311 oligosaccharide metabolic process

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  KJ897787 - Synthetic construct Homo sapiens clone ccsbBroadEn_07181 MOGS gene, encodes complete protein.
LF207223 - JP 2014500723-A/14726: Polycomb-Associated Non-Coding RNAs.
AK292553 - Homo sapiens cDNA FLJ78566 complete cds, highly similar to Homo sapiens glucosidase I, mRNA.
X87237 - H.sapiens mRNA for processing a-glucosidase I.
BC002804 - Homo sapiens glucosidase I, mRNA (cDNA clone IMAGE:3637073), partial cds.
BC028337 - Homo sapiens glucosidase I, mRNA (cDNA clone MGC:34915 IMAGE:5110525), complete cds.
AK292719 - Homo sapiens cDNA FLJ75504 complete cds, highly similar to Homo sapiens glucosidase I, mRNA.
LF363243 - JP 2014500723-A/170746: Polycomb-Associated Non-Coding RNAs.
BC117250 - Homo sapiens glucosidase I, mRNA (cDNA clone MGC:150859 IMAGE:40125801), complete cds.
BC117252 - Homo sapiens glucosidase I, mRNA (cDNA clone MGC:150861 IMAGE:40125803), complete cds.
BC143934 - Homo sapiens cDNA clone IMAGE:9052452, with apparent retained intron.
GQ891420 - Homo sapiens clone HEL-S-141 epididymis secretory sperm binding protein mRNA, complete cds.
JD421766 - Sequence 402790 from Patent EP1572962.
JD241122 - Sequence 222146 from Patent EP1572962.
JD173861 - Sequence 154885 from Patent EP1572962.
JD472790 - Sequence 453814 from Patent EP1572962.
AK313355 - Homo sapiens cDNA, FLJ93881.
LF363242 - JP 2014500723-A/170745: Polycomb-Associated Non-Coding RNAs.
AK307991 - Homo sapiens cDNA, FLJ97939.
LF363241 - JP 2014500723-A/170744: Polycomb-Associated Non-Coding RNAs.
AK304655 - Homo sapiens cDNA FLJ55624 complete cds, highly similar to Mannosyl-oligosaccharide glucosidase (EC 3.2.1.106).
LF363238 - JP 2014500723-A/170741: Polycomb-Associated Non-Coding RNAs.
LF363237 - JP 2014500723-A/170740: Polycomb-Associated Non-Coding RNAs.
DQ600658 - Homo sapiens piRNA piR-38724, complete sequence.
JD027955 - Sequence 8979 from Patent EP1572962.
JD025759 - Sequence 6783 from Patent EP1572962.
JD444341 - Sequence 425365 from Patent EP1572962.
JD367797 - Sequence 348821 from Patent EP1572962.
JD058050 - Sequence 39074 from Patent EP1572962.
MA598820 - JP 2018138019-A/170746: Polycomb-Associated Non-Coding RNAs.
MA598819 - JP 2018138019-A/170745: Polycomb-Associated Non-Coding RNAs.
MA598818 - JP 2018138019-A/170744: Polycomb-Associated Non-Coding RNAs.
MA598815 - JP 2018138019-A/170741: Polycomb-Associated Non-Coding RNAs.
MA598814 - JP 2018138019-A/170740: Polycomb-Associated Non-Coding RNAs.
MA442800 - JP 2018138019-A/14726: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7919 - protein N-glycosylation processing phase (mammalian)

BioCarta from NCI Cancer Genome Anatomy Project
h_eradPathway - ER¿associated degradation (ERAD) Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q13724 (Reactome details) participates in the following event(s):

R-HSA-532678 Trimming of the first glucose by by mannosyl-oligosaccharide glucosidase
R-HSA-532668 N-glycan trimming in the ER and Calnexin/Calreticulin cycle
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A8K938, ENST00000448666.1, ENST00000448666.2, ENST00000448666.3, ENST00000448666.4, ENST00000448666.5, ENST00000448666.6, F5H6D0, GCS1 , MOGS , MOGS_HUMAN, NM_006302, Q13724, Q17RN9, Q8TCT5, uc320qez.1, uc320qez.2
UCSC ID: ENST00000448666.7_11
RefSeq Accession: NM_006302.3
Protein: Q13724 (aka MOGS_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene MOGS:
cdg (Congenital Disorders of N-Linked Glycosylation and Multiple Pathway Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.