Human Gene MKNK2 (ENST00000250896.9_8) from GENCODE V47lift37
  Description: MAPK interacting serine/threonine kinase 2, transcript variant 2 (from RefSeq NM_199054.3)
Gencode Transcript: ENST00000250896.9_8
Gencode Gene: ENSG00000099875.16_18
Transcript (Including UTRs)
   Position: hg19 chr19:2,037,470-2,051,243 Size: 13,774 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr19:2,039,612-2,050,850 Size: 11,239 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:2,037,470-2,051,243)mRNA (may differ from genome)Protein (465 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MKNK2_HUMAN
DESCRIPTION: RecName: Full=MAP kinase-interacting serine/threonine-protein kinase 2; EC=2.7.11.1; AltName: Full=MAP kinase signal-integrating kinase 2; Short=MAPK signal-integrating kinase 2; Short=Mnk2;
FUNCTION: Serine/threonine-protein kinase that phosphorylates SFPQ/PSF, HNRNPA1 and EIF4E. May play a role in the response to environmental stress and cytokines. Appears to regulate translation by phosphorylating EIF4E, thus increasing the affinity of this protein for the 7-methylguanosine-containing mRNA cap. Required for mediating PP2A-inhibition-induced EIF4E phosphorylation. Triggers EIF4E shuttling from cytoplasm to nucleus. Isoform 1 displays a high basal kinase activity, but isoform 2 exhibits a very low kinase activity. Acts as a mediator of the suppressive effects of IFNgamma on hematopoiesis. Negative regulator for signals that control generation of arsenic trioxide As(2)O(3)-dependent apoptosis and anti-leukemic responses. Involved in anti-apoptotic signaling in response to serum withdrawal.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
COFACTOR: Binds 1 zinc ion per subunit.
ENZYME REGULATION: Inhibited by CGP57380 and staurosporine. Activated by phosphorylation in a negative-feedback regulatory manner in response to chemotherapy (e.g. cytarabine) and thus impairs the generation of antileukemic responses.
SUBUNIT: Monomer. Interacts with the C-terminal regions of EIF4G1 and EIF4G2; this interaction is promoted when MAPK pathways are repressed but repressed upon ERK proteins activation. Also binds to dephosphorylated MAPK3/ERK1 and MAPK1/ERK2. Isoform 1 interaction with phosphorylated MAPK3/ERK1 and MAPK1/ERK2 protects it from dephosphorylation and inactivation. Isoform 2 interacts with ESR2 and EIF4E in the nucleus.
SUBCELLULAR LOCATION: Isoform 2: Nucleus, PML body.
SUBCELLULAR LOCATION: Isoform 1: Cytoplasm.
TISSUE SPECIFICITY: Ubiquitously expressed in all tissues examined. Isoform 2 is expressed at higher levels in the ovary than is isoform 1.
PTM: Dual phosphorylation of Thr-244 and Thr-249 activates the kinase. Phosphorylation of Thr-379 activates the kinase. Phosphorylated upon arsenic trioxide As(2)O(3) treatment. Phosphorylated by MAPK1/ERK2, MAPK11 and MAPK14. Dephosphorylated by PP2A.
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 350.01 RPKM in Muscle - Skeletal
Total median expression: 2814.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -146.70245-0.599 Picture PostScript Text
3' UTR -858.702142-0.401 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2AC3 - X-ray MuPIT 2AC5 - X-ray MuPIT 2HW7 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9HBH9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004683 calmodulin-dependent protein kinase activity
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0009931 calcium-dependent protein serine/threonine kinase activity
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006417 regulation of translation
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007166 cell surface receptor signaling pathway
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0030097 hemopoiesis
GO:0035556 intracellular signal transduction
GO:0046777 protein autophosphorylation
GO:0071243 cellular response to arsenic-containing substance
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016604 nuclear body
GO:0016605 PML body


-  Descriptions from all associated GenBank mRNAs
  AL137615 - Homo sapiens mRNA; cDNA DKFZp434N0211 (from clone DKFZp434N0211).
AK024347 - Homo sapiens cDNA FLJ14285 fis, clone PLACE1005932.
AK092536 - Homo sapiens cDNA FLJ35217 fis, clone PROST2000284, highly similar to MAP kinase-interactingserine/threonine-protein kinase 2 (EC 2.7.11.1).
AF125532 - Homo sapiens map kinase-interacting kinase mRNA, complete cds.
AF237776 - Homo sapiens MAP kinase-interacting kinase 2b mRNA, complete cds, alternatively spliced.
AB209074 - Homo sapiens mRNA for MAP kinase-interacting serine/threonine kinase 2 variant protein.
AL137565 - Homo sapiens mRNA; cDNA DKFZp586A1021 (from clone DKFZp586A1021); partial cds.
JD309585 - Sequence 290609 from Patent EP1572962.
JD303623 - Sequence 284647 from Patent EP1572962.
AK023442 - Homo sapiens cDNA FLJ13380 fis, clone PLACE1001007.
BC021235 - Homo sapiens MAP kinase interacting serine/threonine kinase 2, mRNA (cDNA clone IMAGE:4127624).
BC018345 - Homo sapiens MAP kinase interacting serine/threonine kinase 2, mRNA (cDNA clone IMAGE:3860516), complete cds.
BC073140 - Homo sapiens MAP kinase interacting serine/threonine kinase 2, mRNA (cDNA clone MGC:90284 IMAGE:6527053), complete cds.
AK097012 - Homo sapiens cDNA FLJ39693 fis, clone SMINT2010901, highly similar to Homo sapiens MAP kinase-interacting kinase 2a mRNA.
AK001730 - Homo sapiens cDNA FLJ10868 fis, clone NT2RP4001644, weakly similar to MYOSIN LIGHT CHAIN KINASE (EC 2.7.1.117).
JD162107 - Sequence 143131 from Patent EP1572962.
JD506394 - Sequence 487418 from Patent EP1572962.
EU832311 - Synthetic construct Homo sapiens clone HAIB:100067340; DKFZo008D0427 MAP kinase interacting serine/threonine kinase 2 protein (MKNK2) gene, encodes complete protein.
KJ901463 - Synthetic construct Homo sapiens clone ccsbBroadEn_10857 MKNK2 gene, encodes complete protein.
KJ905207 - Synthetic construct Homo sapiens clone ccsbBroadEn_14659 MKNK2 gene, encodes complete protein.
EU832396 - Synthetic construct Homo sapiens clone HAIB:100067425; DKFZo004D0428 MAP kinase interacting serine/threonine kinase 2 protein (MKNK2) gene, encodes complete protein.
AK293742 - Homo sapiens cDNA FLJ53467 complete cds, highly similar to MAP kinase-interactingserine/threonine-protein kinase 2 (EC 2.7.11.1).
AK303393 - Homo sapiens cDNA FLJ54773 complete cds, highly similar to MAP kinase-interactingserine/threonine-protein kinase 2 (EC 2.7.11.1).
AF237775 - Homo sapiens MAP kinase-interacting kinase 2a mRNA, complete cds, alternatively spliced.
AB527864 - Synthetic construct DNA, clone: pF1KB0403, Homo sapiens MKNK2 gene for MAP kinase interacting serine/threonine kinase 2, without stop codon, in Flexi system.
MP014895 - Sequence 98 from Patent WO2019016252.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_erkPathway - Erk1/Erk2 Mapk Signaling pathway
h_mapkPathway - MAPKinase Signaling Pathway

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000250896.1, ENST00000250896.2, ENST00000250896.3, ENST00000250896.4, ENST00000250896.5, ENST00000250896.6, ENST00000250896.7, ENST00000250896.8, GPRK7, MKNK2_HUMAN, MNK2, NM_199054, Q6GPI3, Q9HBH8, Q9HBH9, Q9UHR0, Q9Y2N6, uc317fcn.1, uc317fcn.2
UCSC ID: ENST00000250896.9_8
RefSeq Accession: NM_199054.3
Protein: Q9HBH9 (aka MKNK2_HUMAN or MNK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.