Human Gene MED24 (ENST00000394128.7_8) from GENCODE V47lift37
  Description: mediator complex subunit 24, transcript variant 1 (from RefSeq NM_014815.4)
Gencode Transcript: ENST00000394128.7_8
Gencode Gene: ENSG00000008838.21_16
Transcript (Including UTRs)
   Position: hg19 chr17:38,175,357-38,210,661 Size: 35,305 Total Exon Count: 26 Strand: -
Coding Region
   Position: hg19 chr17:38,175,782-38,209,851 Size: 34,070 Coding Exon Count: 25 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:38,175,357-38,210,661)mRNA (may differ from genome)Protein (989 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MED24_HUMAN
DESCRIPTION: RecName: Full=Mediator of RNA polymerase II transcription subunit 24; AltName: Full=Activator-recruited cofactor 100 kDa component; Short=ARC100; AltName: Full=Cofactor required for Sp1 transcriptional activation subunit 4; Short=CRSP complex subunit 4; AltName: Full=Mediator complex subunit 24; AltName: Full=Thyroid hormone receptor-associated protein 4; AltName: Full=Thyroid hormone receptor-associated protein complex 100 kDa component; Short=Trap100; Short=hTRAP100; AltName: Full=Vitamin D3 receptor-interacting protein complex 100 kDa component; Short=DRIP100;
FUNCTION: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
SUBUNIT: Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Interacts with AR.
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Ubiquitous. Abundant in skeletal muscle, heart and placenta.
SIMILARITY: Belongs to the Mediator complex subunit 24 family.
SEQUENCE CAUTION: Sequence=BAA09479.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MED24
Diseases sorted by gene-association score: transposition of the great arteries (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.06 RPKM in Brain - Cerebellum
Total median expression: 819.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.6085-0.219 Picture PostScript Text
3' UTR -142.50425-0.335 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR021429 - Mediator_Med24_N

Pfam Domains:
PF11277 - Mediator complex subunit 24 N-terminal

SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on O75448
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001104 RNA polymerase II transcription cofactor activity
GO:0003712 transcription cofactor activity
GO:0005515 protein binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
GO:0038023 signaling receptor activity
GO:0042809 vitamin D receptor binding
GO:0046966 thyroid hormone receptor binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0030518 intracellular steroid hormone receptor signaling pathway
GO:0030521 androgen receptor signaling pathway
GO:0045893 positive regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016592 mediator complex


-  Descriptions from all associated GenBank mRNAs
  LF209321 - JP 2014500723-A/16824: Polycomb-Associated Non-Coding RNAs.
BC011375 - Homo sapiens mediator complex subunit 24, mRNA (cDNA clone MGC:8748 IMAGE:3866038), complete cds.
AK291040 - Homo sapiens cDNA FLJ77699 complete cds.
D50920 - Homo sapiens mRNA for KIAA0130 gene.
AK300992 - Homo sapiens cDNA FLJ59441 complete cds, highly similar to Thyroid hormone receptor-associated proteincomplex 100 kDa component.
AK022508 - Homo sapiens cDNA FLJ12446 fis, clone NT2RM1000260, highly similar to Thyroid hormone receptor-associated protein complex 100 kDa component.
EU392538 - Homo sapiens mediator complex subunit MED24 variant MED24_i7 (MED24) mRNA, partial cds, alternatively spliced.
EU392543 - Homo sapiens mediator complex subunit MED24 variant MED24_i12 (MED24) mRNA, partial cds, alternatively spliced.
EU392544 - Homo sapiens mediator complex subunit MED24 variant MED24_i13 (MED24) mRNA, partial cds, alternatively spliced.
EU392554 - Homo sapiens mediator complex subunit MED24 variant MED24_i23 (MED24) mRNA, complete sequence, alternatively spliced.
EU392546 - Homo sapiens mediator complex subunit MED24 variant MED24_i15 (MED24) mRNA, complete cds, alternatively spliced.
EU392547 - Homo sapiens mediator complex subunit MED24 variant MED24_i16 (MED24) mRNA, complete cds, alternatively spliced.
EU392537 - Homo sapiens mediator complex subunit MED24 variant MED24_i6 (MED24) mRNA, partial cds, alternatively spliced.
EU392545 - Homo sapiens mediator complex subunit MED24 variant MED24_i14 (MED24) mRNA, partial cds, alternatively spliced.
EU392552 - Homo sapiens mediator complex subunit MED24 variant MED24_i21 (MED24) mRNA, complete sequence, alternatively spliced.
AK303745 - Homo sapiens cDNA FLJ59652 complete cds, highly similar to Thyroid hormone receptor-associated protein complex 100 kDa component.
JD123657 - Sequence 104681 from Patent EP1572962.
JD190715 - Sequence 171739 from Patent EP1572962.
JD194115 - Sequence 175139 from Patent EP1572962.
JD099702 - Sequence 80726 from Patent EP1572962.
JD473824 - Sequence 454848 from Patent EP1572962.
JD386276 - Sequence 367300 from Patent EP1572962.
AK299864 - Homo sapiens cDNA FLJ59414 complete cds, highly similar to Thyroid hormone receptor-associated protein complex 100 kDa component.
JD254731 - Sequence 235755 from Patent EP1572962.
JD554808 - Sequence 535832 from Patent EP1572962.
JD073429 - Sequence 54453 from Patent EP1572962.
JD342794 - Sequence 323818 from Patent EP1572962.
JD466507 - Sequence 447531 from Patent EP1572962.
AK303502 - Homo sapiens cDNA FLJ58560 complete cds, highly similar to Thyroid hormone receptor-associated protein complex 100 kDa component.
AF055995 - Homo sapiens thyroid hormone receptor-associated protein complex component TRAP100 mRNA, complete cds.
AF277379 - Homo sapiens vitamin D receptor-interacting protein complex component DRIP100 (DRIP100) mRNA, complete cds.
KJ898105 - Synthetic construct Homo sapiens clone ccsbBroadEn_07499 MED24 gene, encodes complete protein.
DQ891082 - Synthetic construct clone IMAGE:100003712; FLH169154.01X; RZPDo839H0194D thyroid hormone receptor associated protein 4 (THRAP4) gene, encodes complete protein.
DQ894264 - Synthetic construct Homo sapiens clone IMAGE:100008724; FLH169150.01L; RZPDo839H0193D thyroid hormone receptor associated protein 4 (THRAP4) gene, encodes complete protein.
AB385282 - Synthetic construct DNA, clone: pF1KA0130, Homo sapiens THRAP4 gene for thyroid hormone receptor-associated protein complex 100 kDa component, complete cds, without stop codon, in Flexi system.
EU392533 - Homo sapiens mediator complex subunit MED24 variant MED24_i2 (MED24) mRNA, partial cds, alternatively spliced.
EU392540 - Homo sapiens mediator complex subunit MED24 variant MED24_i9 (MED24) mRNA, partial cds, alternatively spliced.
EU392542 - Homo sapiens mediator complex subunit MED24 variant MED24_i11 (MED24) mRNA, partial cds, alternatively spliced.
EU392553 - Homo sapiens mediator complex subunit MED24 variant MED24_i22 (MED24) mRNA, complete sequence, alternatively spliced.
AK293309 - Homo sapiens cDNA FLJ59464 complete cds, highly similar to Thyroid hormone receptor-associated proteincomplex 100 kDa component.
LF327663 - JP 2014500723-A/135166: Polycomb-Associated Non-Coding RNAs.
EU392539 - Homo sapiens mediator complex subunit MED24 variant MED24_i8 (MED24) mRNA, partial cds, alternatively spliced.
EU392550 - Homo sapiens mediator complex subunit MED24 variant MED24_i19 (MED24) mRNA, complete sequence, alternatively spliced.
EU392551 - Homo sapiens mediator complex subunit MED24 variant MED24_i20 (MED24) mRNA, complete sequence, alternatively spliced.
EU392541 - Homo sapiens mediator complex subunit MED24 variant MED24_i10 (MED24) mRNA, partial cds, alternatively spliced.
LF327664 - JP 2014500723-A/135167: Polycomb-Associated Non-Coding RNAs.
LF327665 - JP 2014500723-A/135168: Polycomb-Associated Non-Coding RNAs.
CU679914 - Synthetic construct Homo sapiens gateway clone IMAGE:100017513 5' read MED24 mRNA.
EU392534 - Homo sapiens mediator complex subunit MED24 variant MED24_i3 (MED24) mRNA, partial cds, alternatively spliced.
EU392549 - Homo sapiens mediator complex subunit MED24 variant MED24_i18 (MED24) mRNA, complete sequence, alternatively spliced.
EU392536 - Homo sapiens mediator complex subunit MED24 variant MED24_i5 (MED24) mRNA, partial cds, alternatively spliced.
EU392535 - Homo sapiens mediator complex subunit MED24 variant MED24_i4 (MED24) mRNA, partial cds, alternatively spliced.
EU392548 - Homo sapiens mediator complex subunit MED24 variant MED24_i17 (MED24) mRNA, complete sequence, alternatively spliced.
JD466110 - Sequence 447134 from Patent EP1572962.
LF327670 - JP 2014500723-A/135173: Polycomb-Associated Non-Coding RNAs.
MA563240 - JP 2018138019-A/135166: Polycomb-Associated Non-Coding RNAs.
MA563241 - JP 2018138019-A/135167: Polycomb-Associated Non-Coding RNAs.
MA563242 - JP 2018138019-A/135168: Polycomb-Associated Non-Coding RNAs.
MA563247 - JP 2018138019-A/135173: Polycomb-Associated Non-Coding RNAs.
MA444898 - JP 2018138019-A/16824: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O75448 (Reactome details) participates in the following event(s):

R-HSA-212352 Formation of ARC coactivator complex
R-HSA-212380 Formation of TRAP coactivator complex
R-HSA-212432 Formation of DRIP coactivator complex
R-HSA-381309 PPARG:RXRA heterodimer binds to fatty acid-like ligands
R-HSA-212436 Generic Transcription Pathway
R-HSA-381340 Transcriptional regulation of white adipocyte differentiation
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-1266738 Developmental Biology
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A8K4S5, ARC100, B3KMR9, CRSP4, DRIP100, ENST00000394128.1, ENST00000394128.2, ENST00000394128.3, ENST00000394128.4, ENST00000394128.5, ENST00000394128.6, KIAA0130, MED24_HUMAN, NM_014815, O75448, Q14143, Q9NNY5, THRAP4, TRAP100, uc318wkd.1, uc318wkd.2
UCSC ID: ENST00000394128.7_8
RefSeq Accession: NM_014815.4
Protein: O75448 (aka MED24_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.