Human Gene MCM5 (ENST00000216122.9_4) from GENCODE V47lift37
  Description: minichromosome maintenance complex component 5 (from RefSeq NM_006739.4)
Gencode Transcript: ENST00000216122.9_4
Gencode Gene: ENSG00000100297.16_12
Transcript (Including UTRs)
   Position: hg19 chr22:35,796,133-35,821,424 Size: 25,292 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr22:35,796,432-35,820,248 Size: 23,817 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:35,796,133-35,821,424)mRNA (may differ from genome)Protein (734 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MCM5_HUMAN
DESCRIPTION: RecName: Full=DNA replication licensing factor MCM5; EC=3.6.4.12; AltName: Full=CDC46 homolog; AltName: Full=P1-CDC46;
FUNCTION: Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Interacts with MCMBP.
CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
SUBUNIT: Component of the MCM2-7 complex. The complex forms a toroidal hexameric ring with the proposed subunit order MCM2-MCM6- MCM4-MCM7-MCM3-MCM5 (By simililarity).
INTERACTION: P62805:HIST2H4B; NbExp=2; IntAct=EBI-359410, EBI-302023; P49736:MCM2; NbExp=4; IntAct=EBI-359410, EBI-374819; P25205:MCM3; NbExp=3; IntAct=EBI-359410, EBI-355153;
SUBCELLULAR LOCATION: Nucleus.
MISCELLANEOUS: Early fractionation of eukaryotic MCM proteins yielded a variety of dimeric, trimeric and tetrameric complexes with unclear biological significance. The MCM2-7 hexamer is the proposed physiological active complex.
SIMILARITY: Belongs to the MCM family.
SIMILARITY: Contains 1 MCM domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/mcm5/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MCM5
Diseases sorted by gene-association score: meier-gorlin syndrome 8* (950), melanoacanthoma (16)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.97 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 307.49 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -23.3077-0.303 Picture PostScript Text
3' UTR -415.601176-0.353 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008048 - MCM_5
IPR018525 - MCM_CS
IPR001208 - MCM_DNA-dep_ATPase
IPR012340 - NA-bd_OB-fold
IPR016027 - NA-bd_OB-fold-like

Pfam Domains:
PF00493 - MCM P-loop domain
PF14551 - MCM N-terminal domain
PF17207 - MCM OB domain
PF17855 - MCM AAA-lid domain

SCOP Domains:
50249 - Nucleic acid-binding proteins
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on P33992
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
Gene SorterGene Sorter Gene Sorter Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0003688 DNA replication origin binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0006260 DNA replication
GO:0006270 DNA replication initiation
GO:0007049 cell cycle

Cellular Component:
GO:0000784 nuclear chromosome, telomeric region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane
GO:0042555 MCM complex


-  Descriptions from all associated GenBank mRNAs
  LF208154 - JP 2014500723-A/15657: Polycomb-Associated Non-Coding RNAs.
LF373020 - JP 2014500723-A/180523: Polycomb-Associated Non-Coding RNAs.
AK301121 - Homo sapiens cDNA FLJ54759 complete cds, highly similar to DNA replication licensing factor MCM5.
AK223323 - Homo sapiens mRNA for minichromosome maintenance deficient protein 5 variant, clone: TMS07715.
D83986 - Homo sapiens mRNA for DNA replication licensing factor (huMCM5), complete cds.
AK291136 - Homo sapiens cDNA FLJ78580 complete cds, highly similar to Homo sapiens MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (MCM5), mRNA.
AK130620 - Homo sapiens cDNA FLJ27110 fis, clone SPL05630, highly similar to DNA replication licensing factor MCM5.
AK298624 - Homo sapiens cDNA FLJ55743 complete cds, highly similar to DNA replication licensing factor MCM5.
AK312533 - Homo sapiens cDNA, FLJ92902, Homo sapiens MCM5 minichromosome maintenance deficient 5, celldivision cycle 46 (S. cerevisiae) (MCM5), mRNA.
AK122853 - Homo sapiens cDNA FLJ16474 fis, clone BRSSN2012254, highly similar to DNA replication licensing factor MCM5.
BC000142 - Homo sapiens minichromosome maintenance complex component 5, mRNA (cDNA clone MGC:5315 IMAGE:2900229), complete cds.
AK308343 - Homo sapiens cDNA, FLJ98291.
JD135608 - Sequence 116632 from Patent EP1572962.
CR456517 - Homo sapiens MCM5 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.MCM5).
X74795 - H.sapiens P1-Cdc46 mRNA.
BC003656 - Homo sapiens minichromosome maintenance complex component 5, mRNA (cDNA clone MGC:4773 IMAGE:3542201), complete cds.
CU674060 - Synthetic construct Homo sapiens gateway clone IMAGE:100020045 5' read MCM5 mRNA.
CU678562 - Synthetic construct Homo sapiens gateway clone IMAGE:100017474 5' read MCM5 mRNA.
AB463121 - Synthetic construct DNA, clone: pF1KB4809, Homo sapiens MCM5 gene for minichromosome maintenance complex component 5, without stop codon, in Flexi system.
CU013405 - Homo sapiens MCM5, mRNA (cDNA clone IMAGE:100000278), complete cds, without stop codon, in Gateway system.
KJ897175 - Synthetic construct Homo sapiens clone ccsbBroadEn_06569 MCM5 gene, encodes complete protein.
KJ897176 - Synthetic construct Homo sapiens clone ccsbBroadEn_06570 MCM5 gene, encodes complete protein.
CU013117 - Homo sapiens MCM5, mRNA (cDNA clone IMAGE:100000374), complete cds, with stop codon, in Gateway system.
LF373021 - JP 2014500723-A/180524: Polycomb-Associated Non-Coding RNAs.
LF373022 - JP 2014500723-A/180525: Polycomb-Associated Non-Coding RNAs.
LF373023 - JP 2014500723-A/180526: Polycomb-Associated Non-Coding RNAs.
LF373024 - JP 2014500723-A/180527: Polycomb-Associated Non-Coding RNAs.
LF373025 - JP 2014500723-A/180528: Polycomb-Associated Non-Coding RNAs.
AB209612 - Homo sapiens mRNA for minichromosome maintenance deficient protein 5 variant protein.
LF373029 - JP 2014500723-A/180532: Polycomb-Associated Non-Coding RNAs.
LF373036 - JP 2014500723-A/180539: Polycomb-Associated Non-Coding RNAs.
LF373037 - JP 2014500723-A/180540: Polycomb-Associated Non-Coding RNAs.
LF373038 - JP 2014500723-A/180541: Polycomb-Associated Non-Coding RNAs.
LF373042 - JP 2014500723-A/180545: Polycomb-Associated Non-Coding RNAs.
LF373043 - JP 2014500723-A/180546: Polycomb-Associated Non-Coding RNAs.
LF373044 - JP 2014500723-A/180547: Polycomb-Associated Non-Coding RNAs.
LF373045 - JP 2014500723-A/180548: Polycomb-Associated Non-Coding RNAs.
LF373046 - JP 2014500723-A/180549: Polycomb-Associated Non-Coding RNAs.
LF373047 - JP 2014500723-A/180550: Polycomb-Associated Non-Coding RNAs.
LF373051 - JP 2014500723-A/180554: Polycomb-Associated Non-Coding RNAs.
LF373053 - JP 2014500723-A/180556: Polycomb-Associated Non-Coding RNAs.
LF373054 - JP 2014500723-A/180557: Polycomb-Associated Non-Coding RNAs.
JD531230 - Sequence 512254 from Patent EP1572962.
JD386682 - Sequence 367706 from Patent EP1572962.
JD041990 - Sequence 23014 from Patent EP1572962.
JD554619 - Sequence 535643 from Patent EP1572962.
JD167119 - Sequence 148143 from Patent EP1572962.
JD260897 - Sequence 241921 from Patent EP1572962.
JD227219 - Sequence 208243 from Patent EP1572962.
JD160094 - Sequence 141118 from Patent EP1572962.
LF373055 - JP 2014500723-A/180558: Polycomb-Associated Non-Coding RNAs.
MA608597 - JP 2018138019-A/180523: Polycomb-Associated Non-Coding RNAs.
MA608598 - JP 2018138019-A/180524: Polycomb-Associated Non-Coding RNAs.
MA608599 - JP 2018138019-A/180525: Polycomb-Associated Non-Coding RNAs.
MA608600 - JP 2018138019-A/180526: Polycomb-Associated Non-Coding RNAs.
MA608601 - JP 2018138019-A/180527: Polycomb-Associated Non-Coding RNAs.
MA608602 - JP 2018138019-A/180528: Polycomb-Associated Non-Coding RNAs.
MA608606 - JP 2018138019-A/180532: Polycomb-Associated Non-Coding RNAs.
MA608613 - JP 2018138019-A/180539: Polycomb-Associated Non-Coding RNAs.
MA608614 - JP 2018138019-A/180540: Polycomb-Associated Non-Coding RNAs.
MA608615 - JP 2018138019-A/180541: Polycomb-Associated Non-Coding RNAs.
MA608619 - JP 2018138019-A/180545: Polycomb-Associated Non-Coding RNAs.
MA608620 - JP 2018138019-A/180546: Polycomb-Associated Non-Coding RNAs.
MA608621 - JP 2018138019-A/180547: Polycomb-Associated Non-Coding RNAs.
MA608622 - JP 2018138019-A/180548: Polycomb-Associated Non-Coding RNAs.
MA608623 - JP 2018138019-A/180549: Polycomb-Associated Non-Coding RNAs.
MA608624 - JP 2018138019-A/180550: Polycomb-Associated Non-Coding RNAs.
MA608628 - JP 2018138019-A/180554: Polycomb-Associated Non-Coding RNAs.
MA608630 - JP 2018138019-A/180556: Polycomb-Associated Non-Coding RNAs.
MA608631 - JP 2018138019-A/180557: Polycomb-Associated Non-Coding RNAs.
MA608632 - JP 2018138019-A/180558: Polycomb-Associated Non-Coding RNAs.
MA443731 - JP 2018138019-A/15657: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mcmPathway - CDK Regulation of DNA Replication

Reactome (by CSHL, EBI, and GO)

Protein P33992 (Reactome details) participates in the following event(s):

R-HSA-69019 Mcm4,6,7 trimer forms and associates with the replication fork
R-HSA-68849 Mcm2-7 associates with the Cdt1:CDC6:ORC:origin complex, forming the pre-replicative complex (preRC)
R-HSA-68954 Mcm2-7 is phosphorylated by DDK
R-HSA-176942 Multiple proteins are localized at replication fork
R-HSA-68919 Mcm10 associates with the pre-replicative complex, stabilizing Mcm2-7
R-HSA-68944 Orc1 is phosphorylated by cyclin A/CDK2
R-HSA-169468 MCM2-7 mediated fork unwinding
R-HSA-68940 Cdt1 is displaced from the pre-replicative complex.
R-HSA-68918 CDK and DDK associate with the Mcm10:pre-replicative complex
R-HSA-68917 Cdc45 associates with the pre-replicative complex at the origin
R-HSA-68916 DNA Replication Factor A (RPA) associates with the pre-replicative complex at the origin
R-HSA-176318 Loading of claspin onto DNA during replication origin firing
R-HSA-176298 Activation of claspin
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-68867 Assembly of the pre-replicative complex
R-HSA-68962 Activation of the pre-replicative complex
R-HSA-176974 Unwinding of DNA
R-HSA-69239 Synthesis of DNA
R-HSA-68949 Orc1 removal from chromatin
R-HSA-69002 DNA Replication Pre-Initiation
R-HSA-69206 G1/S Transition
R-HSA-69190 DNA strand elongation
R-HSA-69242 S Phase
R-HSA-69306 DNA Replication
R-HSA-68874 M/G1 Transition
R-HSA-453279 Mitotic G1-G1/S phases
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle
R-HSA-176187 Activation of ATR in response to replication stress
R-HSA-69481 G2/M Checkpoints
R-HSA-69620 Cell Cycle Checkpoints

-  Other Names for This Gene
  Alternate Gene Symbols: CDC46, ENST00000216122.1, ENST00000216122.2, ENST00000216122.3, ENST00000216122.4, ENST00000216122.5, ENST00000216122.6, ENST00000216122.7, ENST00000216122.8, MCM5_HUMAN, NM_006739, O60785, P33992, Q14578, Q9BTJ4, Q9BWL8, uc317con.1, uc317con.2
UCSC ID: ENST00000216122.9_4
RefSeq Accession: NM_006739.4
Protein: P33992 (aka MCM5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.