Human Gene MCM4 (ENST00000649973.1_9) from GENCODE V47lift37
  Description: minichromosome maintenance complex component 4, transcript variant 2 (from RefSeq NM_182746.3)
Gencode Transcript: ENST00000649973.1_9
Gencode Gene: ENSG00000104738.19_19
Transcript (Including UTRs)
   Position: hg19 chr8:48,873,501-48,890,720 Size: 17,220 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr8:48,873,705-48,889,338 Size: 15,634 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:48,873,501-48,890,720)mRNA (may differ from genome)Protein (863 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MCM4_HUMAN
DESCRIPTION: RecName: Full=DNA replication licensing factor MCM4; EC=3.6.4.12; AltName: Full=CDC21 homolog; AltName: Full=P1-CDC21;
FUNCTION: Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.
CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
SUBUNIT: Component of the MCM2-7 complex. The complex forms a toroidal hexameric ring with the proposed subunit order MCM2-MCM6- MCM4-MCM7-MCM3-MCM5 (By simililarity). Interacts with MCMBP.
INTERACTION: P33993:MCM7; NbExp=6; IntAct=EBI-374938, EBI-355924; Q9Q2G4:ORF (xeno); NbExp=3; IntAct=EBI-374938, EBI-6248094;
SUBCELLULAR LOCATION: Nucleus (By similarity).
MISCELLANEOUS: Early fractionation of eukaryotic MCM proteins yielded a variety of dimeric, trimeric and tetrameric complexes with unclear biological significance. Specifically a MCM467 subcomplex is shown to have in vitro helicase activity which is inhibited by the MCM2 subunit. The MCM2-7 hexamer is the proposed physiological active complex.
SIMILARITY: Belongs to the MCM family.
SIMILARITY: Contains 1 MCM domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/mcm4/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MCM4
Diseases sorted by gene-association score: natural killer cell and glucocorticoid deficiency with dna repair defect* (1370), image syndrome (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.2088-0.366 Picture PostScript Text
3' UTR -477.901382-0.346 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003593 - AAA+_ATPase
IPR008047 - MCM_4
IPR018525 - MCM_CS
IPR001208 - MCM_DNA-dep_ATPase
IPR012340 - NA-bd_OB-fold
IPR016027 - NA-bd_OB-fold-like

Pfam Domains:
PF00493 - MCM P-loop domain
PF01078 - Magnesium chelatase, subunit ChlI
PF07726 - ATPase family associated with various cellular activities (AAA)
PF07728 - AAA domain (dynein-related subfamily)
PF14551 - MCM N-terminal domain
PF17207 - MCM OB domain
PF17855 - MCM AAA-lid domain

SCOP Domains:
48695 - Multiheme cytochromes
50249 - Nucleic acid-binding proteins
52540 - P-loop containing nucleoside triphosphate hydrolases
57783 - Zinc beta-ribbon

ModBase Predicted Comparative 3D Structure on P33991
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
Gene SorterGene Sorter Gene Sorter Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0003697 single-stranded DNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0004003 ATP-dependent DNA helicase activity

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0006260 DNA replication
GO:0006268 DNA unwinding involved in DNA replication
GO:0006270 DNA replication initiation
GO:0007049 cell cycle

Cellular Component:
GO:0000784 nuclear chromosome, telomeric region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016020 membrane
GO:0042555 MCM complex


-  Descriptions from all associated GenBank mRNAs
  BC038772 - Homo sapiens cDNA clone IMAGE:5270727, **** WARNING: chimeric clone ****.
AK309812 - Homo sapiens cDNA, FLJ99853.
AK296913 - Homo sapiens cDNA FLJ54365 complete cds, highly similar to DNA replication licensing factor MCM4.
AK022899 - Homo sapiens cDNA FLJ12837 fis, clone NT2RP2003228, highly similar to DNA replication licensing factor MCM4.
X74794 - H.sapiens P1-Cdc21 mRNA.
BC031061 - Homo sapiens minichromosome maintenance complex component 4, mRNA (cDNA clone MGC:33310 IMAGE:5273457), complete cds.
AB590735 - Synthetic construct DNA, clone: pFN21AE2132, Homo sapiens MCM4 gene for minichromosome maintenance complex component 4, without stop codon, in Flexi system.
AM493756 - Homo sapiens partial mRNA for minichromosome maintenance protein 4 (MCM4 gene) isolated from bone marrow.
JD536007 - Sequence 517031 from Patent EP1572962.
DQ587614 - Homo sapiens piRNA piR-54726, complete sequence.
JD396793 - Sequence 377817 from Patent EP1572962.
JD189252 - Sequence 170276 from Patent EP1572962.
JD481292 - Sequence 462316 from Patent EP1572962.
JD209027 - Sequence 190051 from Patent EP1572962.
JD431366 - Sequence 412390 from Patent EP1572962.
JD257085 - Sequence 238109 from Patent EP1572962.
JD204596 - Sequence 185620 from Patent EP1572962.
JD428822 - Sequence 409846 from Patent EP1572962.
JD502424 - Sequence 483448 from Patent EP1572962.
JD036853 - Sequence 17877 from Patent EP1572962.
JD041453 - Sequence 22477 from Patent EP1572962.
JD041454 - Sequence 22478 from Patent EP1572962.
JD321214 - Sequence 302238 from Patent EP1572962.
JD388686 - Sequence 369710 from Patent EP1572962.
JD388687 - Sequence 369711 from Patent EP1572962.
JD517216 - Sequence 498240 from Patent EP1572962.
JD105047 - Sequence 86071 from Patent EP1572962.
JD531396 - Sequence 512420 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mcmPathway - CDK Regulation of DNA Replication

Reactome (by CSHL, EBI, and GO)

Protein P33991 (Reactome details) participates in the following event(s):

R-HSA-68849 Mcm2-7 associates with the Cdt1:CDC6:ORC:origin complex, forming the pre-replicative complex (preRC)
R-HSA-68954 Mcm2-7 is phosphorylated by DDK
R-HSA-69019 Mcm4,6,7 trimer forms and associates with the replication fork
R-HSA-176942 Multiple proteins are localized at replication fork
R-HSA-68919 Mcm10 associates with the pre-replicative complex, stabilizing Mcm2-7
R-HSA-68944 Orc1 is phosphorylated by cyclin A/CDK2
R-HSA-169468 MCM2-7 mediated fork unwinding
R-HSA-68940 Cdt1 is displaced from the pre-replicative complex.
R-HSA-68918 CDK and DDK associate with the Mcm10:pre-replicative complex
R-HSA-68917 Cdc45 associates with the pre-replicative complex at the origin
R-HSA-68916 DNA Replication Factor A (RPA) associates with the pre-replicative complex at the origin
R-HSA-176318 Loading of claspin onto DNA during replication origin firing
R-HSA-176298 Activation of claspin
R-HSA-68867 Assembly of the pre-replicative complex
R-HSA-68962 Activation of the pre-replicative complex
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-176974 Unwinding of DNA
R-HSA-68949 Orc1 removal from chromatin
R-HSA-69002 DNA Replication Pre-Initiation
R-HSA-69206 G1/S Transition
R-HSA-69239 Synthesis of DNA
R-HSA-69190 DNA strand elongation
R-HSA-68874 M/G1 Transition
R-HSA-453279 Mitotic G1-G1/S phases
R-HSA-69242 S Phase
R-HSA-69306 DNA Replication
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-176187 Activation of ATR in response to replication stress
R-HSA-1640170 Cell Cycle
R-HSA-69481 G2/M Checkpoints
R-HSA-69620 Cell Cycle Checkpoints

-  Other Names for This Gene
  Alternate Gene Symbols: CDC21, MCM4 , MCM4_HUMAN, NM_182746, P33991, Q8NEH1, Q99658, uc328qxx.1, uc328qxx.2
UCSC ID: ENST00000649973.1_9
RefSeq Accession: NM_182746.3
Protein: P33991 (aka MCM4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.