Human Gene MASP1 (ENST00000337774.10_10) from GENCODE V47lift37
  Description: MBL associated serine protease 1, transcript variant 1 (from RefSeq NM_001879.6)
Gencode Transcript: ENST00000337774.10_10
Gencode Gene: ENSG00000127241.18_14
Transcript (Including UTRs)
   Position: hg19 chr3:186,935,070-187,009,525 Size: 74,456 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr3:186,937,859-187,009,420 Size: 71,562 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:186,935,070-187,009,525)mRNA (may differ from genome)Protein (699 aa)
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-  Comments and Description Text from UniProtKB
  ID: MASP1_HUMAN
DESCRIPTION: RecName: Full=Mannan-binding lectin serine protease 1; EC=3.4.21.-; AltName: Full=Complement factor MASP-3; AltName: Full=Complement-activating component of Ra-reactive factor; AltName: Full=Mannose-binding lectin-associated serine protease 1; Short=MASP-1; AltName: Full=Mannose-binding protein-associated serine protease; AltName: Full=Ra-reactive factor serine protease p100; Short=RaRF; AltName: Full=Serine protease 5; Contains: RecName: Full=Mannan-binding lectin serine protease 1 heavy chain; Contains: RecName: Full=Mannan-binding lectin serine protease 1 light chain; Flags: Precursor;
FUNCTION: Functions in the lectin pathway of complement, which performs a key role in innate immunity by recognizing pathogens through patterns of sugar moieties and neutralizing them. The lectin pathway is triggered upon binding of mannan-binding lectin (MBL) and ficolins to sugar moieties which leads to activation of the associated proteases MASP1 and MASP2. Functions as an endopeptidase and may activate MASP2 or C2 or directly activate C3 the key component of complement reaction. Isoform 2 may have an inhibitory effect on the activation of the lectin pathway of complement or may cleave IGFBP5.
ENZYME REGULATION: Inhibited by SERPING1 and A2M.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=0.10 mM for Ac-Gly-Lys-OMe (at 30 degrees Celsius); KM=310 uM for Bz-Arg-OEt (at 30 degrees Celsius); KM=4.8 uM for C2 (at 37 degrees Celsius);
SUBUNIT: Homodimer. Interacts with the oligomeric lectins MBL2, FCN2 and FCN3; triggers the lectin pathway of complement through activation of C3. Interacts with SERPING1.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Protein of the plasma which is primarily expressed by liver.
PTM: The iron and 2-oxoglutarate dependent 3-hydroxylation of aspartate and asparagine is (R) stereospecific within EGF domains (By similarity).
PTM: N-glycosylated. Some N-linked glycan are of the complex-type (By similarity).
PTM: Autoproteolytic processing of the proenzyme produces the active enzyme composed on the heavy and the light chain held together by a disulfide bond. Isoform 1 but not isoform 2 is activated through autoproteolytic processing.
DISEASE: Defects in MASP1 are the cause of 3MC syndrome type 1 (3MC1) [MIM:257920]. 3MC1 is a disorder characterized by facial dysmorphism that includes hypertelorism, blepharophimosis, blepharoptosis and highly arched eyebrows, cleft lip and/or palate, craniosynostosis, learning disability and genital, limb and vesicorenal anomalies. The term 3MC syndrome includes Carnevale, Mingarelli, Malpuech, and Michels syndromes.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 2 CUB domains.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 peptidase S1 domain.
SIMILARITY: Contains 2 Sushi (CCP/SCR) domains.
SEQUENCE CAUTION: Sequence=AAH39724.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MASP1
Diseases sorted by gene-association score: 3mc syndrome 1* (1019), 3mc syndrome* (309), iga glomerulonephritis (12), learning disability (9), progressive relapsing multiple sclerosis (7), hereditary angioedema (7), babesiosis (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 40.99 RPKM in Cervix - Ectocervix
Total median expression: 234.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -23.50105-0.224 Picture PostScript Text
3' UTR -801.402789-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016060 - Complement_control_module
IPR000859 - CUB
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR018097 - EGF_Ca-bd_CS
IPR009003 - Pept_cys/ser_Trypsin-like
IPR024175 - Pept_S1A_C1r/C1S/mannan-bd
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A
IPR000436 - Sushi_SCR_CCP

Pfam Domains:
PF00084 - Sushi repeat (SCR repeat)
PF00089 - Trypsin
PF00431 - CUB domain
PF07645 - Calcium-binding EGF domain

SCOP Domains:
49854 - Spermadhesin, CUB domain
50494 - Trypsin-like serine proteases
57535 - Complement control module/SCR domain
57196 - EGF/Laminin
57184 - Growth factor receptor domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3DEM - X-ray MuPIT 3GOV - X-ray MuPIT 4AQB - X-ray MuPIT 4DJZ - X-ray


ModBase Predicted Comparative 3D Structure on P48740
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0048306 calcium-dependent protein binding

Biological Process:
GO:0001867 complement activation, lectin pathway
GO:0002376 immune system process
GO:0006508 proteolysis
GO:0006898 receptor-mediated endocytosis
GO:0006956 complement activation
GO:0045087 innate immune response
GO:0045916 negative regulation of complement activation

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005654 nucleoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  D17525 - Homo sapiens mRNA for precursor of P100 serine protease of Ra-reactive factor, complete cds.
JD061617 - Sequence 42641 from Patent EP1572962.
JD239643 - Sequence 220667 from Patent EP1572962.
JD509414 - Sequence 490438 from Patent EP1572962.
JD563728 - Sequence 544752 from Patent EP1572962.
JD252548 - Sequence 233572 from Patent EP1572962.
JD473359 - Sequence 454383 from Patent EP1572962.
JD287203 - Sequence 268227 from Patent EP1572962.
JD084460 - Sequence 65484 from Patent EP1572962.
JD337925 - Sequence 318949 from Patent EP1572962.
JD354310 - Sequence 335334 from Patent EP1572962.
JD305339 - Sequence 286363 from Patent EP1572962.
JD237633 - Sequence 218657 from Patent EP1572962.
JD120926 - Sequence 101950 from Patent EP1572962.
JD423802 - Sequence 404826 from Patent EP1572962.
JD236997 - Sequence 218021 from Patent EP1572962.
JD232894 - Sequence 213918 from Patent EP1572962.
JD184887 - Sequence 165911 from Patent EP1572962.
JD121004 - Sequence 102028 from Patent EP1572962.
JD272648 - Sequence 253672 from Patent EP1572962.
JD132003 - Sequence 113027 from Patent EP1572962.
JD398447 - Sequence 379471 from Patent EP1572962.
JD511006 - Sequence 492030 from Patent EP1572962.
JD307785 - Sequence 288809 from Patent EP1572962.
JD076730 - Sequence 57754 from Patent EP1572962.
JD146029 - Sequence 127053 from Patent EP1572962.
D28593 - Homo sapiens MASP mRNA for MBP associated serine protease, complete cds.
JD412300 - Sequence 393324 from Patent EP1572962.
JD182810 - Sequence 163834 from Patent EP1572962.
JD544897 - Sequence 525921 from Patent EP1572962.
JD516142 - Sequence 497166 from Patent EP1572962.
JD288254 - Sequence 269278 from Patent EP1572962.
JD221498 - Sequence 202522 from Patent EP1572962.
JD081909 - Sequence 62933 from Patent EP1572962.
JD247721 - Sequence 228745 from Patent EP1572962.
JD365698 - Sequence 346722 from Patent EP1572962.
JD507428 - Sequence 488452 from Patent EP1572962.
JD515660 - Sequence 496684 from Patent EP1572962.
BX641029 - Homo sapiens mRNA; cDNA DKFZp686M0562 (from clone DKFZp686M0562).
AF284421 - Homo sapiens complement factor MASP-3 mRNA, complete cds.
BX647237 - Homo sapiens mRNA; cDNA DKFZp686O1553 (from clone DKFZp686O1553).
AK291157 - Homo sapiens cDNA FLJ75203 complete cds, highly similar to Homo sapiens mannan-binding lectin serine protease 1 (C4/C2activating component of Ra-reactive factor) (MASP1), transcriptvariant 2, mRNA.
AK291686 - Homo sapiens cDNA FLJ78716 complete cds, highly similar to Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) (MASP1), transcript variant 2, mRNA.
AK304334 - Homo sapiens cDNA FLJ53279 complete cds, highly similar to Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) (MASP1), transcript variant 2, mRNA.
BC106945 - Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor), mRNA (cDNA clone MGC:126283 IMAGE:40034551), complete cds.
BC106946 - Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor), mRNA (cDNA clone MGC:126284 IMAGE:40034552), complete cds.
KJ897392 - Synthetic construct Homo sapiens clone ccsbBroadEn_06786 MASP1 gene, encodes complete protein.
AB590956 - Synthetic construct DNA, clone: pFN21AE2070, Homo sapiens MASP1 gene for mannan-binding lectin serine peptidase 1, without stop codon, in Flexi system.
BC039724 - Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor), mRNA (cDNA clone IMAGE:5243260), partial cds.
CR749615 - Homo sapiens mRNA; cDNA DKFZp686I01199 (from clone DKFZp686I01199).
AK129893 - Homo sapiens cDNA FLJ26383 fis, clone HRT06776, highly similar to Complement-activating component of Ra-reactive factor precursor (EC 3.4.21.-).
AK300663 - Homo sapiens cDNA FLJ55004 complete cds, highly similar to Complement-activating component of Ra-reactive factor precursor (EC 3.4.21.-).
JD361627 - Sequence 342651 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_lectinPathway - Lectin Induced Complement Pathway
h_compPathway - Complement Pathway

Reactome (by CSHL, EBI, and GO)

Protein P48740 (Reactome details) participates in the following event(s):

R-HSA-2203480 COLEC11 binds ligands
R-HSA-166721 MBL binds to repetitive carbohydrate structures on the surfaces of viruses, bacteria, fungi, and protozoa
R-HSA-2855054 Ficolin-2 binds to molecular patterns on the target cell surface
R-HSA-2855125 Ficolin-1 binds to molecular patterns on the target cell surface
R-HSA-2855077 Ficolin-3 binds to molecular patterns on the target cell surface
R-HSA-8852509 CL-LK binds carbohydrates on target cell surface
R-HSA-166726 Activation of MASPs
R-HSA-166753 Conversion of C4 into C4a and C4b
R-HSA-166792 Conversion of C2 into C2a and C2b
R-HSA-3000480 Scavenging by Class A Receptors
R-HSA-166662 Lectin pathway of complement activation
R-HSA-2855086 Ficolins bind to repetitive carbohydrate structures on the target cell surface
R-HSA-2173782 Binding and Uptake of Ligands by Scavenger Receptors
R-HSA-166786 Creation of C4 and C2 activators
R-HSA-5653656 Vesicle-mediated transport
R-HSA-166663 Initial triggering of complement
R-HSA-166658 Complement cascade
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K542, A8K6M1, B4E2L7, CRARF, CRARF1, ENST00000337774.1, ENST00000337774.2, ENST00000337774.3, ENST00000337774.4, ENST00000337774.5, ENST00000337774.6, ENST00000337774.7, ENST00000337774.8, ENST00000337774.9, MASP1_HUMAN, NM_001879, O95570, P48740, PRSS5, Q68D21, Q8IUV8, Q96RS4, Q9UF09, uc317uvr.1, uc317uvr.2
UCSC ID: ENST00000337774.10_10
RefSeq Accession: NM_001879.6
Protein: P48740 (aka MASP1_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.