Human Gene MAP7 (ENST00000354570.8_12) from GENCODE V47lift37
  Description: microtubule associated protein 7, transcript variant 4 (from RefSeq NM_003980.6)
Gencode Transcript: ENST00000354570.8_12
Gencode Gene: ENSG00000135525.19_15
Transcript (Including UTRs)
   Position: hg19 chr6:136,663,872-136,871,560 Size: 207,689 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr6:136,665,366-136,871,546 Size: 206,181 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:136,663,872-136,871,560)mRNA (may differ from genome)Protein (749 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MAP7_HUMAN
DESCRIPTION: RecName: Full=Ensconsin; AltName: Full=Epithelial microtubule-associated protein of 115 kDa; Short=E-MAP-115; AltName: Full=Microtubule-associated protein 7; Short=MAP-7;
FUNCTION: Microtubule-stabilizing protein that may play an important role during reorganization of microtubules during polarization and differentiation of epithelial cells. Associates with microtubules in a dynamic manner. May play a role in the formation of intercellular contacts. Colocalization with TRPV4 results in the redistribution of TRPV4 toward the membrane and may link cytoskeletal microfilaments.
SUBUNIT: Interacts with TRPV4 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, perinuclear region. Basolateral cell membrane. Cytoplasm, cytoskeleton. Note=Colocalized on microtubules. An intracellular redistribution is triggered during induction of keratinocyte terminal differentiation from microtubules with a perinuclear localization to cortical microtubules organized in spike-like bundles facing intercellular contacts.
TISSUE SPECIFICITY: Expressed in the skin and cells of epithelial origin. Predominantly expressed in the suprabasal layers of the normal epidermis and relatively abundant in squamous cell carcinomas but barely detectable in basal cell carcinomas.
INDUCTION: Up-regulated upon terminal differentiation of primary keratinocytes.
PTM: The association with microtubules is regulated by phosphorylation during the cell cycle. During interphase only phosphorylated on serine. Phosphorylated on threonine in mitosis.
SIMILARITY: Belongs to the MAP7 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.80 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 404.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -335.801494-0.225 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008604 - E-MAP-115

Pfam Domains:
PF05672 - MAP7 (E-MAP-115) family

ModBase Predicted Comparative 3D Structure on Q14244
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005198 structural molecule activity
GO:0005515 protein binding

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0006970 response to osmotic stress
GO:0007163 establishment or maintenance of cell polarity
GO:0072659 protein localization to plasma membrane

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005875 microtubule associated complex
GO:0005886 plasma membrane
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane
GO:0016323 basolateral plasma membrane
GO:0030424 axon
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC025777 - Homo sapiens microtubule-associated protein 7, mRNA (cDNA clone MGC:34092 IMAGE:5222987), complete cds.
X73882 - H.sapiens E-MAP-115 mRNA.
AK316529 - Homo sapiens cDNA, FLJ79428 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK299355 - Homo sapiens cDNA FLJ56145 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK294461 - Homo sapiens cDNA FLJ50486 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK296483 - Homo sapiens cDNA FLJ50557 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK295749 - Homo sapiens cDNA FLJ50537 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK316062 - Homo sapiens cDNA, FLJ78961 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK296556 - Homo sapiens cDNA FLJ50558 complete cds, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AJ242501 - Homo sapiens mRNA for E-MAP-115/95 (MAP gene).
AJ242502 - Homo sapiens mRNA for E-MAP-115/105 (MAP gene).
KJ897955 - Synthetic construct Homo sapiens clone ccsbBroadEn_07349 MAP7 gene, encodes complete protein.
AB384694 - Synthetic construct DNA, clone: pF1KB1290, Homo sapiens MAP7 gene for microtubule-associated protein 7, complete cds, without stop codon, in Flexi system.
DQ890946 - Synthetic construct clone IMAGE:100003576; FLH167861.01X; RZPDo839G0590D microtubule-associated protein 7 (MAP7) gene, encodes complete protein.
DQ896812 - Synthetic construct Homo sapiens clone IMAGE:100011272; FLH167857.01L; RZPDo839G0589D microtubule-associated protein 7 (MAP7) gene, encodes complete protein.
AK312789 - Homo sapiens cDNA, FLJ93207, highly similar to Homo sapiens microtubule-associated protein 7 (MAP7), mRNA.
AK311114 - Homo sapiens cDNA, FLJ18156.
CU693064 - Synthetic construct Homo sapiens gateway clone IMAGE:100017797 5' read MAP7 mRNA.
AK307873 - Homo sapiens cDNA, FLJ97821.
AK311236 - Homo sapiens cDNA, FLJ18278.
AK311234 - Homo sapiens cDNA, FLJ18276.
AK311227 - Homo sapiens cDNA, FLJ18269.
AK311270 - Homo sapiens cDNA, FLJ18312.
AJ420541 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1075604.
JD356756 - Sequence 337780 from Patent EP1572962.
JD094484 - Sequence 75508 from Patent EP1572962.
JD024988 - Sequence 6012 from Patent EP1572962.
JD028129 - Sequence 9153 from Patent EP1572962.
AB073649 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla00172, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z290, B7Z400, B7Z5S7, B7Z9U7, C9JPS0, E9PCP3, ENST00000354570.1, ENST00000354570.2, ENST00000354570.3, ENST00000354570.4, ENST00000354570.5, ENST00000354570.6, ENST00000354570.7, F5H1E2, MAP7_HUMAN, NM_003980, Q14244, Q7Z6S0, Q8TAU5, Q9NY82, Q9NY83, uc317yrs.1, uc317yrs.2
UCSC ID: ENST00000354570.8_12
RefSeq Accession: NM_003980.6
Protein: Q14244 (aka MAP7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.