Human Gene MAP6 (ENST00000304771.8_11) from GENCODE V47lift37
  Description: microtubule associated protein 6, transcript variant 1 (from RefSeq NM_033063.2)
Gencode Transcript: ENST00000304771.8_11
Gencode Gene: ENSG00000171533.12_15
Transcript (Including UTRs)
   Position: hg19 chr11:75,297,963-75,380,083 Size: 82,121 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr11:75,298,104-75,379,414 Size: 81,311 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:75,297,963-75,380,083)mRNA (may differ from genome)Protein (813 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MAP6_HUMAN
DESCRIPTION: RecName: Full=Microtubule-associated protein 6; Short=MAP-6; AltName: Full=Stable tubule-only polypeptide; Short=STOP;
FUNCTION: Involved in microtubule stabilization in many cell types, including neuronal cells. Specifically has microtubule cold stabilizing activity.
SUBUNIT: Interacts with calmodulin (via C-terminus); the interaction is dependent on Ca(2+) (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton. Golgi apparatus (By similarity). Note=Colocalizes with neurofilament (NF)-rich inclusions in spinal chord and brain neurons of patients with amyotrophic lateral sclerosis (ALS).
TISSUE SPECIFICITY: Expressed in brain (at protein level). Expressed in spinal chord. Isoform 2 expression is up-regulated in the prefrontal cortex (Brodmann's area 46) of patients with schizophrenia (postmortem brain study).
SIMILARITY: Belongs to the STOP family.
SEQUENCE CAUTION: Sequence=AAH63860.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAP6
Diseases sorted by gene-association score: tick-borne relapsing fever (8), schizophrenia (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.72 RPKM in Pituitary
Total median expression: 339.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -303.80669-0.454 Picture PostScript Text
3' UTR -31.80141-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007882 - STOP
IPR024963 - STOP/FAM154

ModBase Predicted Comparative 3D Structure on Q96JE9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0008017 microtubule binding

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0032418 lysosome localization
GO:0048813 dendrite morphogenesis

Cellular Component:
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0016020 membrane
GO:0030424 axon
GO:0030425 dendrite
GO:0030658 transport vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0042995 cell projection
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF207786 - JP 2014500723-A/15289: Polycomb-Associated Non-Coding RNAs.
BC063860 - Homo sapiens microtubule-associated protein 6, mRNA (cDNA clone IMAGE:6184943), partial cds.
AK123340 - Homo sapiens cDNA FLJ41346 fis, clone BRAWH2005315, moderately similar to Neuronal-STOP protein.
BC139780 - Homo sapiens microtubule-associated protein 6, mRNA (cDNA clone MGC:150586 IMAGE:40122938), complete cds.
BC150254 - Homo sapiens microtubule-associated protein 6, mRNA (cDNA clone MGC:166811 IMAGE:9007181), complete cds.
AB058781 - Homo sapiens KIAA1878 mRNA for KIAA1878 protein.
BC041411 - Homo sapiens microtubule-associated protein 6, mRNA (cDNA clone IMAGE:5285139), with apparent retained intron.
AB527183 - Synthetic construct DNA, clone: pF1KA1878, Homo sapiens MAP6 gene for microtubule-associated protein 6, without stop codon, in Flexi system.
MA443363 - JP 2018138019-A/15289: Polycomb-Associated Non-Coding RNAs.
KJ901565 - Synthetic construct Homo sapiens clone ccsbBroadEn_10959 MAP6 gene, encodes complete protein.
LF369117 - JP 2014500723-A/176620: Polycomb-Associated Non-Coding RNAs.
LF369104 - JP 2014500723-A/176607: Polycomb-Associated Non-Coding RNAs.
LF369099 - JP 2014500723-A/176602: Polycomb-Associated Non-Coding RNAs.
MA604694 - JP 2018138019-A/176620: Polycomb-Associated Non-Coding RNAs.
MA604681 - JP 2018138019-A/176607: Polycomb-Associated Non-Coding RNAs.
MA604676 - JP 2018138019-A/176602: Polycomb-Associated Non-Coding RNAs.
LF212130 - JP 2014500723-A/19633: Polycomb-Associated Non-Coding RNAs.
LF369092 - JP 2014500723-A/176595: Polycomb-Associated Non-Coding RNAs.
LF369091 - JP 2014500723-A/176594: Polycomb-Associated Non-Coding RNAs.
JD206926 - Sequence 187950 from Patent EP1572962.
LF369090 - JP 2014500723-A/176593: Polycomb-Associated Non-Coding RNAs.
JD307784 - Sequence 288808 from Patent EP1572962.
JD103446 - Sequence 84470 from Patent EP1572962.
JD144173 - Sequence 125197 from Patent EP1572962.
JD271830 - Sequence 252854 from Patent EP1572962.
JD065306 - Sequence 46330 from Patent EP1572962.
JD186784 - Sequence 167808 from Patent EP1572962.
JD134703 - Sequence 115727 from Patent EP1572962.
JD519645 - Sequence 500669 from Patent EP1572962.
MA604669 - JP 2018138019-A/176595: Polycomb-Associated Non-Coding RNAs.
MA604668 - JP 2018138019-A/176594: Polycomb-Associated Non-Coding RNAs.
MA604667 - JP 2018138019-A/176593: Polycomb-Associated Non-Coding RNAs.
MA447707 - JP 2018138019-A/19633: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A7E2A1, ENST00000304771.1, ENST00000304771.2, ENST00000304771.3, ENST00000304771.4, ENST00000304771.5, ENST00000304771.6, ENST00000304771.7, KIAA1878, MAP6_HUMAN, NM_033063, Q6P3T0, Q6ZWB8, Q96JE9, uc317nmx.1, uc317nmx.2
UCSC ID: ENST00000304771.8_11
RefSeq Accession: NM_033063.2
Protein: Q96JE9 (aka MAP6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.