Human Gene MAP2 (ENST00000682079.1_5) from GENCODE V47lift37
  Description: microtubule associated protein 2, transcript variant 26 (from RefSeq NM_001375506.1)
Gencode Transcript: ENST00000682079.1_5
Gencode Gene: ENSG00000078018.22_17
Transcript (Including UTRs)
   Position: hg19 chr2:210,288,771-210,598,836 Size: 310,066 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr2:210,517,895-210,595,121 Size: 77,227 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:210,288,771-210,598,836)mRNA (may differ from genome)Protein (1827 aa)
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-  Comments and Description Text from UniProtKB
  ID: MAP2_HUMAN
DESCRIPTION: RecName: Full=Microtubule-associated protein 2; Short=MAP-2;
FUNCTION: The exact function of MAP2 is unknown but MAPs may stabilize the microtubules against depolymerization. They also seem to have a stiffening effect on microtubules.
INTERACTION: Q13951:CBFB; NbExp=2; IntAct=EBI-2682460, EBI-718750;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (Probable).
PTM: Phosphorylated at serine residues in K-X-G-S motifs by MAP/microtubule affinity-regulating kinase (MARK1 or MARK2), causing detachment from microtubules, and their disassembly (By similarity). MAP2A/c is phosphorylated. Phosphorylated upon DNA damage, probably by ATM or ATR. Isoform MAP2c is phosphorylated by FYN at Tyr-67.
SIMILARITY: Contains 3 Tau/MAP repeats.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAP2
Diseases sorted by gene-association score: central neurocytoma (20), pituicytoma (12), human monocytic ehrlichiosis (11), ganglioglioma (11), chiari malformation (10), brain ischemia (9), papillary tumor of the pineal region (9), olivopontocerebellar atrophy (9), dysembryoplastic neuroepithelial tumor (8), striatonigral degeneration (8), merkel cell carcinoma (7), mucopolysaccharidosis type iiia (7), prion disease (7), occlusion precerebral artery (7), hemimegalencephaly (7), neuronal migration disorders (6), chondroid chordoma (6), pleomorphic xanthoastrocytoma (6), scrapie (6), optic nerve neoplasm (6), transient cerebral ischemia (6), mixed germ cell cancer (5), carotid artery occlusion (5), cerebellar liponeurocytoma (5), brain glioma (5), clear cell ependymoma (5), ischemia (4), optic nerve glioma (4), medulloblastoma (2), schizophrenia (1), stroke, ischemic (1), parkinson disease, late-onset (1), amyotrophic lateral sclerosis 1 (0)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -109.69451-0.243 Picture PostScript Text
3' UTR -891.453715-0.240 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013588 - MAP2_projctn
IPR001084 - Tau/MAP_tubulin-bd_rpt

Pfam Domains:
PF00418 - Tau and MAP protein, tubulin-binding repeat
PF08377 - MAP2/Tau projection domain

ModBase Predicted Comparative 3D Structure on P11137
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002162 dystroglycan binding
GO:0005198 structural molecule activity
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0008017 microtubule binding
GO:0015631 tubulin binding

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0001578 microtubule bundle formation
GO:0007409 axonogenesis
GO:0016358 dendrite development
GO:0021954 central nervous system neuron development
GO:0030010 establishment of cell polarity
GO:0030517 negative regulation of axon extension
GO:0031113 regulation of microtubule polymerization
GO:0031115 negative regulation of microtubule polymerization
GO:0031175 neuron projection development
GO:0048813 dendrite morphogenesis
GO:0050770 regulation of axonogenesis
GO:0071310 cellular response to organic substance
GO:1901953 positive regulation of anterograde dense core granule transport
GO:1902513 regulation of organelle transport along microtubule
GO:1903744 positive regulation of anterograde synaptic vesicle transport
GO:1903827 regulation of cellular protein localization
GO:1904527 negative regulation of microtubule binding
GO:2000575 negative regulation of microtubule motor activity

Cellular Component:
GO:0005622 intracellular
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005875 microtubule associated complex
GO:0014069 postsynaptic density
GO:0030425 dendrite
GO:0032839 dendrite cytoplasm
GO:0034399 nuclear periphery
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0043025 neuronal cell body
GO:0043194 axon initial segment
GO:0043198 dendritic shaft
GO:0043203 axon hillock
GO:0044294 dendritic growth cone
GO:0044297 cell body
GO:0044307 dendritic branch
GO:0097441 basilar dendrite
GO:0097442 CA3 pyramidal cell dendrite
GO:1902737 dendritic filopodium
GO:1990635 proximal dendrite
GO:1990769 proximal neuron projection
GO:0044304 main axon


-  Descriptions from all associated GenBank mRNAs
  BC038857 - Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:5223046), complete cds.
BC066648 - Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:6012668), partial cds.
BC110423 - Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:5242955), complete cds.
U01828 - Human microtubule-associated protein 2 (MAP2) mRNA, complete cds.
AK307603 - Homo sapiens cDNA, FLJ97551.
AB209330 - Homo sapiens mRNA for microtubule-associated protein 2 isoform 2 variant protein.
BC027583 - Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:4837202).
BC143245 - Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:9051746), complete cds.
BC117123 - Homo sapiens microtubule-associated protein 2, mRNA (cDNA clone IMAGE:40125674), complete cds.
JD417397 - Sequence 398421 from Patent EP1572962.
JD301986 - Sequence 283010 from Patent EP1572962.
AK291446 - Homo sapiens cDNA FLJ77141 complete cds, highly similar to Homo sapiens microtubule-associated protein 2 (MAP2), transcript variant 2, mRNA.
JD530091 - Sequence 511115 from Patent EP1572962.
CU691614 - Synthetic construct Homo sapiens gateway clone IMAGE:100020908 5' read MAP2 mRNA.
AB529090 - Synthetic construct DNA, clone: pF1KB4240, Homo sapiens MAP2 gene for microtubule-associated protein 2, without stop codon, in Flexi system.
BC172263 - Synthetic construct Homo sapiens clone IMAGE:100068957, MGC:198968 microtubule-associated protein 2 (MAP2) mRNA, encodes complete protein.
BC172568 - Synthetic construct Homo sapiens clone IMAGE:100069262, MGC:199273 microtubule-associated protein 2 (MAP2) mRNA, encodes complete protein.
JF432335 - Synthetic construct Homo sapiens clone IMAGE:100073523 microtubule-associated protein 2 (MAP2) gene, encodes complete protein.
KJ897165 - Synthetic construct Homo sapiens clone ccsbBroadEn_06559 MAP2 gene, encodes complete protein.
U89329 - Human alternatively spliced microtubule-associated protein 2C (MAP2) mRNA, complete cds.
U89330 - Human alternatively spliced microtubule-associated protein 2 (MAP2) mRNA, complete cds.
M25668 - Human microtubule associated protein 2 (MAP2) mRNA, partial sequence.
AL833567 - Homo sapiens mRNA; cDNA DKFZp686I2148 (from clone DKFZp686I2148).
S76756 - 4R-MAP2=microtubule-associated protein 2 4R isoform [human, brain, mRNA Partial, 1012 nt].
CQ873794 - Sequence 213 from Patent WO2004076622.
DD413631 - Regulation of Mammalian Cells.
JD338412 - Sequence 319436 from Patent EP1572962.
JD073691 - Sequence 54715 from Patent EP1572962.
JD315289 - Sequence 296313 from Patent EP1572962.
JD166751 - Sequence 147775 from Patent EP1572962.
JD090410 - Sequence 71434 from Patent EP1572962.
JD291334 - Sequence 272358 from Patent EP1572962.
AF088065 - Homo sapiens full length insert cDNA clone ZD86B04.
AK055674 - Homo sapiens cDNA FLJ31112 fis, clone IMR322000316.
AK056148 - Homo sapiens cDNA FLJ31586 fis, clone NT2RI2002211.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_akapCentrosomePathway - Protein Kinase A at the Centrosome

-  Other Names for This Gene
  Alternate Gene Symbols: MTAP2_HUMAN, NM_001375506, P11137, Q17S04, Q8IUX2, Q99975, Q99976, uc330jju.1, uc330jju.2
UCSC ID: ENST00000682079.1_5
RefSeq Accession: NM_001375505.1
Protein: P11137 (aka MAP2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.