Human Gene LZTS2 (ENST00000454422.2_5) from GENCODE V47lift37
  Description: leucine zipper tumor suppressor 2, transcript variant 13 (from RefSeq NM_001394952.1)
Gencode Transcript: ENST00000454422.2_5
Gencode Gene: ENSG00000107816.17_10
Transcript (Including UTRs)
   Position: hg19 chr10:102,759,565-102,767,590 Size: 8,026 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr10:102,762,296-102,766,925 Size: 4,630 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:102,759,565-102,767,590)mRNA (may differ from genome)Protein (669 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MGIPubMedUniProtKB

-  Comments and Description Text from UniProtKB
  ID: LZTS2_HUMAN
DESCRIPTION: RecName: Full=Leucine zipper putative tumor suppressor 2; Short=hLZTS2; AltName: Full=Protein LAPSER1;
FUNCTION: Negative regulator of katanin-mediated microtubule severing and release from the centrosome. Required for central spindle formation and the completion of cytokinesis. May negatively regulate axonal outgrowth by preventing the formation of microtubule bundles that are necessary for transport within the elongating axon. Negative regulator of the Wnt signaling pathway. Represses beta-catenin-mediated transcriptional activation by promoting the nuclear exclusion of beta-catenin.
SUBUNIT: Interacts with KATNB1. Also interacts with CTNNB1, gamma- tubulin and KIF23.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton, centrosome. Note=Localized to the centrosome throughout the cell cycle. Localized to the midbody in cells undergoing cytokinesis.
TISSUE SPECIFICITY: Highly expressed in prostate and testis, and at slightly lower levels in spleen, thymus, uterus, small intestine and colon.
INDUCTION: By inhibition of NF-kappa-B signaling.
SIMILARITY: Belongs to the LZTS2 family.
SEQUENCE CAUTION: Sequence=BAB47442.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.26 RPKM in Uterus
Total median expression: 551.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -116.80187-0.625 Picture PostScript Text
3' UTR -237.40665-0.357 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009638 - Fez1

Pfam Domains:
PF06818 - Fez1

SCOP Domains:
101447 - Formin homology 2 domain (FH2 domain)

ModBase Predicted Comparative 3D Structure on Q9BRK4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0001822 kidney development
GO:0007049 cell cycle
GO:0008285 negative regulation of cell proliferation
GO:0016055 Wnt signaling pathway
GO:0030178 negative regulation of Wnt signaling pathway
GO:0051301 cell division
GO:0072001 renal system development
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:1900181 negative regulation of protein localization to nucleus

Cellular Component:
GO:0005737 cytoplasm
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005886 plasma membrane
GO:0031982 vesicle


-  Descriptions from all associated GenBank mRNAs
  BC006212 - Homo sapiens leucine zipper, putative tumor suppressor 2, mRNA (cDNA clone MGC:2586 IMAGE:3161855), complete cds.
AK298208 - Homo sapiens cDNA FLJ60755 complete cds, highly similar to Leucine zipper putative tumor suppressor 2.
AB058716 - Homo sapiens KIAA1813 mRNA for KIAA1813 protein.
BC058938 - Homo sapiens leucine zipper, putative tumor suppressor 2, mRNA (cDNA clone MGC:65190 IMAGE:3913470), complete cds.
JD484761 - Sequence 465785 from Patent EP1572962.
JD462571 - Sequence 443595 from Patent EP1572962.
JD455417 - Sequence 436441 from Patent EP1572962.
JD260812 - Sequence 241836 from Patent EP1572962.
AB384299 - Synthetic construct DNA, clone: pF1KSDA1813, Homo sapiens LZTS2 gene for leucine zipper putative tumor suppressor 2, complete cds, without stop codon, in Flexi system.
KJ894998 - Synthetic construct Homo sapiens clone ccsbBroadEn_04392 LZTS2 gene, encodes complete protein.
KJ899795 - Synthetic construct Homo sapiens clone ccsbBroadEn_09189 LZTS2 gene, encodes complete protein.
JD470706 - Sequence 451730 from Patent EP1572962.
JD060011 - Sequence 41035 from Patent EP1572962.
AY029201 - Homo sapiens LAPSER1 (LAPSER1) mRNA, complete cds.
AK097997 - Homo sapiens cDNA FLJ40678 fis, clone THYMU2022660.
AL834338 - Homo sapiens mRNA; cDNA DKFZp761K1711 (from clone DKFZp761K1711).
BC005855 - Homo sapiens leucine zipper, putative tumor suppressor 2, mRNA (cDNA clone IMAGE:2988487), partial cds.
JD059320 - Sequence 40344 from Patent EP1572962.
JD448569 - Sequence 429593 from Patent EP1572962.
JD210790 - Sequence 191814 from Patent EP1572962.
JD371689 - Sequence 352713 from Patent EP1572962.
JD242080 - Sequence 223104 from Patent EP1572962.
JD470911 - Sequence 451935 from Patent EP1572962.
JD379533 - Sequence 360557 from Patent EP1572962.
JD533488 - Sequence 514512 from Patent EP1572962.
JD141074 - Sequence 122098 from Patent EP1572962.
JD468091 - Sequence 449115 from Patent EP1572962.
JD335170 - Sequence 316194 from Patent EP1572962.
JD324788 - Sequence 305812 from Patent EP1572962.
JD334854 - Sequence 315878 from Patent EP1572962.
JD137704 - Sequence 118728 from Patent EP1572962.
JD449764 - Sequence 430788 from Patent EP1572962.
JD108675 - Sequence 89699 from Patent EP1572962.
JD554637 - Sequence 535661 from Patent EP1572962.
JD564656 - Sequence 545680 from Patent EP1572962.
JD193304 - Sequence 174328 from Patent EP1572962.
JD525951 - Sequence 506975 from Patent EP1572962.
JD359148 - Sequence 340172 from Patent EP1572962.
JD566221 - Sequence 547245 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B1AL14, D3DR72, ENST00000454422.1, KIAA1813, LAPSER1 , LZTS2 , LZTS2_HUMAN, NM_001394952, Q8N3I0, Q96J79, Q96JL2, Q9BRK4, uc320vof.1, uc320vof.2
UCSC ID: ENST00000454422.2_5
RefSeq Accession: NM_001318100.2
Protein: Q9BRK4 (aka LZTS2_HUMAN or LZT2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.