Human Gene LPAR4 (ENST00000614823.5_4) from GENCODE V47lift37
  Description: lysophosphatidic acid receptor 4, transcript variant 1 (from RefSeq NM_001278000.3)
Gencode Transcript: ENST00000614823.5_4
Gencode Gene: ENSG00000147145.14_9
Transcript (Including UTRs)
   Position: hg19 chrX:78,003,217-78,014,211 Size: 10,995 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chrX:78,010,367-78,011,479 Size: 1,113 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:78,003,217-78,014,211)mRNA (may differ from genome)Protein (370 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: LPAR4_HUMAN
DESCRIPTION: RecName: Full=Lysophosphatidic acid receptor 4; Short=LPA receptor 4; Short=LPA-4; AltName: Full=G-protein coupled receptor 23; AltName: Full=P2Y purinoceptor 9; Short=P2Y9; AltName: Full=P2Y5-like receptor; AltName: Full=Purinergic receptor 9;
FUNCTION: Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities. Transduces a signal by increasing the intracellular calcium ions and by stimulating adenylyl cyclase activity. The rank order of potency for agonists of this receptor is 1-oleoyl- > 1-stearoyl- > 1-palmitoyl- > 1-myristoyl- > 1- alkyl- > 1-alkenyl-LPA.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: High expression in ovary. Not detected in the brain regions thalamus, putamen, caudate, frontal cortex, pons, hypothalamus and hippocampus.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: LPAR4
Diseases sorted by gene-association score: differentiated thyroid carcinoma* (97)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -157.50609-0.259 Picture PostScript Text
3' UTR -518.652732-0.190 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR002188 - P2Y5_purnocptor

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q99677
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0008289 lipid binding
GO:0035727 lysophosphatidic acid binding
GO:0070915 lysophosphatidic acid receptor activity

Biological Process:
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0035025 positive regulation of Rho protein signal transduction
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016604 nuclear body
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AK314134 - Homo sapiens cDNA, FLJ94832, Homo sapiens G protein-coupled receptor 23 (GPR23), mRNA.
BC095538 - Homo sapiens lysophosphatidic acid receptor 4, mRNA (cDNA clone MGC:111757 IMAGE:30706564), complete cds.
U90322 - Human purinergic receptor P2Y9 mRNA, complete cds.
BC069996 - Homo sapiens lysophosphatidic acid receptor 4, mRNA (cDNA clone MGC:79281 IMAGE:6971739), complete cds.
BC074722 - Homo sapiens lysophosphatidic acid receptor 4, mRNA (cDNA clone MGC:103791 IMAGE:30915172), complete cds.
KJ896920 - Synthetic construct Homo sapiens clone ccsbBroadEn_06314 LPAR4 gene, encodes complete protein.
JD509470 - Sequence 490494 from Patent EP1572962.
JD349730 - Sequence 330754 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99677 (Reactome details) participates in the following event(s):

R-HSA-417820 P2Y9 receptor can bind to LPA
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-417957 P2Y receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-418038 Nucleotide-like (purinergic) receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2RAC7, ENST00000614823.1, ENST00000614823.2, ENST00000614823.3, ENST00000614823.4, GPR23, LPA4, LPAR4_HUMAN, NM_001278000, O15132, P2RY9, Q502U9, Q6NSP5, Q99677, uc327pmq.1, uc327pmq.2
UCSC ID: ENST00000614823.5_4
RefSeq Accession: NM_001278000.3
Protein: Q99677 (aka LPAR4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.