Human Gene LCN1P1 (ENST00000372031.3_4) from GENCODE V47lift37

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Description: lipocalin 1 pseudogene 1 (from HGNC LCN1P1)
Gencode Transcript: ENST00000372031.3_4
Gencode Gene: ENSG00000119440.8_8
Transcript (Including UTRs)
Position: hg19 chr9:136,100,292-136,103,978 Size: 3,687 Total Exon Count: 6 Strand: -

Page Index	Sequence and Links	Primers	RNA-Seq Expression	Other Species	mRNA Descriptions
Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr9:136,100,292-136,103,978)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	Ensembl
ExonPrimer	HGNC	PubMed

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 1.11 RPKM in Ovary Total median expression: 5.27 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs

Other Names for This Gene


	Alternate Gene Symbols: ENST00000372031.1, ENST00000372031.2, uc318jpb.1 UCSC ID: ENST00000372031.3_4 RefSeq Accession: NM_000014.6

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.