Human Gene KRT19 (ENST00000361566.7_7) from GENCODE V47lift37
  Description: keratin 19 (from RefSeq NM_002276.5)
Gencode Transcript: ENST00000361566.7_7
Gencode Gene: ENSG00000171345.13_12
Transcript (Including UTRs)
   Position: hg19 chr17:39,679,869-39,684,560 Size: 4,692 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr17:39,679,995-39,684,499 Size: 4,505 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:39,679,869-39,684,560)mRNA (may differ from genome)Protein (400 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: K1C19_HUMAN
DESCRIPTION: RecName: Full=Keratin, type I cytoskeletal 19; AltName: Full=Cytokeratin-19; Short=CK-19; AltName: Full=Keratin-19; Short=K19;
FUNCTION: Involved in the organization of myofibers. Together with KRT8, helps to link the contractile apparatus to dystrophin at the costameres of striated muscle.
SUBUNIT: Heterotetramer of two type I and two type II keratins. Interacts with PNN and the actin-binding domain of DMD. Interacts with HCV core protein.
INTERACTION: P11532:DMD; NbExp=2; IntAct=EBI-742756, EBI-295827;
TISSUE SPECIFICITY: Expressed in a defined zone of basal keratinocytes in the deep outer root sheath of hair follicles. Also observed in sweat gland and mammary gland ductal and secretory cells, bile ducts, gastrointestinal tract, bladder urothelium, oral epithelia, esophagus, ectocervical epithelium (at protein level). Expressed in epidermal basal cells, in nipple epidermis and a defined region of the hair follicle. Also seen in a subset of vascular wall cells in both the veins and artery of human umbilical cord, and in umbilical cord vascular smooth muscle. Observed in muscle fibers accumulating in the costameres of myoplasm at the sarcolemma in structures that contain dystrophin and spectrin.
DEVELOPMENTAL STAGE: Present in hair follicles at all stages of development.
DOMAIN: This keratin differs from all other IF proteins in lacking the C-terminal tail domain.
MISCELLANEOUS: There are two types of cytoskeletal and microfibrillar keratin: I (acidic; 40-55 kDa) and II (neutral to basic; 56-70 kDa).
SIMILARITY: Belongs to the intermediate filament family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KRT19
Diseases sorted by gene-association score: lung cancer (9), thyroid cancer (8), follicular adenoma (7), papillary carcinoma (6), squamous cell carcinoma (6), hepatocellular carcinoma (5), anal canal adenocarcinoma (5), pancreatic cancer (5), lung squamous cell carcinoma (5), regional odontodysplasia (4), hashimoto thyroiditis (4), chordoma (4), basal cell carcinoma (4), proliferating trichilemmal cyst (4), urinary bladder cancer (4), cholangiocarcinoma, susceptibility to (4), lipoadenoma (4), idiopathic corneal edema (4), bile duct carcinoma (4), thyroid cancer, nonmedullary, 1 (4), breast cancer (4), intrahepatic cholangiocarcinoma (4), pericardial mesothelioma (3), oral squamous cell carcinoma (3), oral cancer (3), liver angiosarcoma (3), breast carcinoma in situ (3), anal gland adenocarcinoma (3), limbal stem cell deficiency (2), small cell cancer of the lung, somatic (2), bladder cancer, somatic (2), thyroid cancer, nonmedullary, 2 (2), odontoma (2), splenic tuberculosis (2), sarcoma, synovial (2), colorectal cancer (2), cholangitis, primary sclerosing (2), bile duct adenocarcinoma (2), anus adenocarcinoma (2), intrahepatic bile duct adenoma (2), pinguecula (2), primary cutaneous amyloidosis (2), renal cell carcinoma (2), predominantly cortical thymoma (2), cutaneous adenocystic carcinoma (2), eccrine adenocarcinoma (2), malignant leydig cell tumor (1), morpheaform basal cell carcinoma (1), corneal abscess (1), bladder carcinoma in situ (1), pericardium cancer (1), cervical clear cell adenocarcinoma (1), epidural neoplasm (1), chondroid lipoma (1), malignant struma ovarii (1), gastrointestinal system cancer (1), mucinous tubular and spindle renal cell carcinoma (1), superior mesenteric artery syndrome (1), immune system organ benign neoplasm (1), thymus lipoma (1), cell type cancer (1), biliary papillomatosis (1), intraneural perineurioma (1), colloid carcinoma of the pancreas (1), white sponge nevus 1 (1), chronic laryngitis (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 553.23 RPKM in Small Intestine - Terminal Ileum
Total median expression: 4007.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.4061-0.220 Picture PostScript Text
3' UTR -43.40126-0.344 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016044 - F
IPR001664 - IF
IPR018039 - Intermediate_filament_CS
IPR002957 - Keratin_I
IPR009053 - Prefoldin

Pfam Domains:
PF00038 - Intermediate filament protein

SCOP Domains:
46579 - Prefoldin
64593 - Intermediate filament protein, coiled coil region
90257 - Myosin rod fragments
161270 - PspA lactotransferrin-binding region

ModBase Predicted Comparative 3D Structure on P08727
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005198 structural molecule activity
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0008307 structural constituent of muscle
GO:0044877 macromolecular complex binding

Biological Process:
GO:0007219 Notch signaling pathway
GO:0016032 viral process
GO:0031424 keratinization
GO:0043627 response to estrogen
GO:0045214 sarcomere organization
GO:0060706 cell differentiation involved in embryonic placenta development
GO:0070268 cornification

Cellular Component:
GO:0005829 cytosol
GO:0005882 intermediate filament
GO:0005886 plasma membrane
GO:0016010 dystrophin-associated glycoprotein complex
GO:0016327 apicolateral plasma membrane
GO:0030018 Z disc
GO:0042383 sarcolemma
GO:0043034 costamere
GO:0070062 extracellular exosome
GO:0071944 cell periphery
GO:1990357 terminal web


-  Descriptions from all associated GenBank mRNAs
  AK293479 - Homo sapiens cDNA FLJ60424 complete cds, highly similar to Junction plakoglobin.
JD269330 - Sequence 250354 from Patent EP1572962.
BC084574 - Homo sapiens keratin 19, mRNA (cDNA clone MGC:99486 IMAGE:6730698), complete cds.
BC002539 - Homo sapiens keratin 19, mRNA (cDNA clone MGC:1712 IMAGE:3138504), complete cds.
BC007628 - Homo sapiens keratin 19, mRNA (cDNA clone MGC:15788 IMAGE:3504206), complete cds.
BC010409 - Homo sapiens keratin 19, mRNA (cDNA clone MGC:15366 IMAGE:3689178), complete cds.
Y00503 - Human mRNA for keratin 19.
BC067744 - Homo sapiens keratin 19, mRNA (cDNA clone MGC:87006 IMAGE:30332499), complete cds.
JD426475 - Sequence 407499 from Patent EP1572962.
DQ892179 - Synthetic construct clone IMAGE:100004809; FLH183732.01X; RZPDo839F12142D keratin 19 (KRT19) gene, encodes complete protein.
DQ895373 - Synthetic construct Homo sapiens clone IMAGE:100009833; FLH183731.01L; RZPDo839F12141D keratin 19 (KRT19) gene, encodes complete protein.
AK313261 - Homo sapiens cDNA, FLJ93770, highly similar to Homo sapiens keratin 19 (KRT19), mRNA.
KJ897115 - Synthetic construct Homo sapiens clone ccsbBroadEn_06509 KRT19 gene, encodes complete protein.
AB527586 - Synthetic construct DNA, clone: pF1KB6566, Homo sapiens KRT19 gene for keratin 19, without stop codon, in Flexi system.
AB041267 - Homo sapiens mRNA for keratin 19, partial cds, isolate:K19-140.
AB041268 - Homo sapiens mRNA for keratin 19, partial cds, isolate:K19-153.
CU679705 - Synthetic construct Homo sapiens gateway clone IMAGE:100019238 5' read KRT19 mRNA.
DL491653 - Novel nucleic acids.
DL490239 - Novel nucleic acids.
JD023908 - Sequence 4932 from Patent EP1572962.
JD033698 - Sequence 14722 from Patent EP1572962.
JD172714 - Sequence 153738 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P08727 (Reactome details) participates in the following event(s):

R-HSA-6805546 Keratin type I binds keratin type II
R-HSA-6805573 Keratin type I/type II heterodimers form tetramers
R-HSA-6806613 Keratin tetramers bind to form unit length filaments
R-HSA-6805567 Keratinization
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: B2R874, ENST00000361566.1, ENST00000361566.2, ENST00000361566.3, ENST00000361566.4, ENST00000361566.5, ENST00000361566.6, K1C19_HUMAN, NM_002276, P08727, Q5XG83, Q6NW33, Q7L5M9, Q96A53, Q96FV1, Q9BYF9, Q9P1Y4, uc318cee.1, uc318cee.2
UCSC ID: ENST00000361566.7_7
RefSeq Accession: NM_002276.5
Protein: P08727 (aka K1C19_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.