Human Gene KLRC1 (ENST00000359151.8_7) from GENCODE V47lift37
  Description: killer cell lectin like receptor C1, transcript variant 1 (from RefSeq NM_002259.5)
Gencode Transcript: ENST00000359151.8_7
Gencode Gene: ENSG00000134545.14_11
Transcript (Including UTRs)
   Position: hg19 chr12:10,598,627-10,605,976 Size: 7,350 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr12:10,599,150-10,603,755 Size: 4,606 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:10,598,627-10,605,976)mRNA (may differ from genome)Protein (233 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NKG2A_HUMAN
DESCRIPTION: RecName: Full=NKG2-A/NKG2-B type II integral membrane protein; AltName: Full=CD159 antigen-like family member A; AltName: Full=NK cell receptor A; AltName: Full=NKG2-A/B-activating NK receptor; AltName: CD_antigen=CD159a;
FUNCTION: Plays a role as a receptor for the recognition of MHC class I HLA-E molecules by NK cells and some cytotoxic T-cells.
SUBUNIT: Can form disulfide-bonded heterodimer with CD94.
SUBCELLULAR LOCATION: Membrane; Single-pass type II membrane protein.
TISSUE SPECIFICITY: Natural killer cells.
SIMILARITY: Contains 1 C-type lectin domain.
WEB RESOURCE: Name=Functional Glycomics Gateway - Glycan Binding; Note=NKG-2A; URL="http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_245";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KLRC1
Diseases sorted by gene-association score: bare lymphocyte syndrome, type i (6), vulvar intraepithelial neoplasia (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.08 RPKM in Spleen
Total median expression: 10.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.80211-0.260 Picture PostScript Text
3' UTR -104.10523-0.199 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001304 - C-type_lectin
IPR016186 - C-type_lectin-like
IPR016187 - C-type_lectin_fold

Pfam Domains:
PF00059 - Lectin C-type domain
PF05473 - UL45 protein, carbohydrate-binding C-type lectin-like

SCOP Domains:
56436 - C-type lectin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2RMX - NMR MuPIT 2YU7 - NMR MuPIT 3BDW - X-ray MuPIT 3CDG - X-ray MuPIT 3CII - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P26715
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004888 transmembrane signaling receptor activity
GO:0005515 protein binding
GO:0023024 MHC class I protein complex binding
GO:0030246 carbohydrate binding
GO:1990405 protein antigen binding

Biological Process:
GO:0007166 cell surface receptor signaling pathway
GO:0050776 regulation of immune response

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  AK310992 - Homo sapiens cDNA, FLJ18034.
X54867 - Human mRNA for NKG2-A gene.
X54868 - Human mRNA for NKG2-B gene.
AF461812 - Homo sapiens NKG2A mRNA, complete cds.
BC053840 - Homo sapiens killer cell lectin-like receptor subfamily C, member 1, mRNA (cDNA clone MGC:59791 IMAGE:5484921), complete cds.
BC012550 - Homo sapiens killer cell lectin-like receptor subfamily C, member 1, mRNA (cDNA clone MGC:13374 IMAGE:4042168), complete cds.
JD145807 - Sequence 126831 from Patent EP1572962.
JD310624 - Sequence 291648 from Patent EP1572962.
DQ892740 - Synthetic construct clone IMAGE:100005370; FLH189265.01X; RZPDo839D0474D killer cell lectin-like receptor subfamily C, member 1 (KLRC1) gene, encodes complete protein.
CU680356 - Synthetic construct Homo sapiens gateway clone IMAGE:100023354 5' read KLRC1 mRNA.
KJ891516 - Synthetic construct Homo sapiens clone ccsbBroadEn_00910 KLRC1 gene, encodes complete protein.
KJ897100 - Synthetic construct Homo sapiens clone ccsbBroadEn_06494 KLRC1 gene, encodes complete protein.
DQ895986 - Synthetic construct Homo sapiens clone IMAGE:100010446; FLH189261.01L; RZPDo839D0464D killer cell lectin-like receptor subfamily C, member 1 (KLRC1) gene, encodes complete protein.
DQ896730 - Synthetic construct Homo sapiens clone IMAGE:100011190; FLH263672.01L; RZPDo839D0981D killer cell lectin-like receptor subfamily C, member 1 (KLRC1) gene, encodes complete protein.
AB529160 - Synthetic construct DNA, clone: pF1KB6948, Homo sapiens KLRC1 gene for killer cell lectin-like receptor subfamily C, member 1, without stop codon, in Flexi system.
CU691034 - Synthetic construct Homo sapiens gateway clone IMAGE:100022388 5' read KLRC1 mRNA.
JD107000 - Sequence 88024 from Patent EP1572962.
JD433519 - Sequence 414543 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nkcellsPathway - Ras-Independent pathway in NK cell-mediated cytotoxicity

Reactome (by CSHL, EBI, and GO)

Protein P26715 (Reactome details) participates in the following event(s):

R-HSA-199062 KLRC1:KLRD1 heterodimer interacts with HLA-E
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000359151.1, ENST00000359151.2, ENST00000359151.3, ENST00000359151.4, ENST00000359151.5, ENST00000359151.6, ENST00000359151.7, NKG2A , NKG2A_HUMAN, NM_002259, P26715, uc318axf.1, uc318axf.2
UCSC ID: ENST00000359151.8_7
RefSeq Accession: NM_002259.5
Protein: P26715 (aka NKG2A_HUMAN or NKGA_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.