Human Gene KIF2C (ENST00000372224.9_10) from GENCODE V47lift37
  Description: kinesin family member 2C, transcript variant 1 (from RefSeq NM_006845.4)
Gencode Transcript: ENST00000372224.9_10
Gencode Gene: ENSG00000142945.13_15
Transcript (Including UTRs)
   Position: hg19 chr1:45,205,509-45,233,439 Size: 27,931 Total Exon Count: 21 Strand: +
Coding Region
   Position: hg19 chr1:45,205,605-45,232,851 Size: 27,247 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:45,205,509-45,233,439)mRNA (may differ from genome)Protein (725 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KIF2C_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF2C; AltName: Full=Kinesin-like protein 6; AltName: Full=Mitotic centromere-associated kinesin; Short=MCAK;
FUNCTION: In complex with KIF18B, constitutes the major microtubule plus-end depolymerizing activity in mitotic cells. Regulates the turnover of microtubules at the kinetochore and functions in chromosome segregation during mitosis.
SUBUNIT: Interacts with CENPH. Interacts with MTUS2/TIP150; the interaction is direct. Interacts with MAPRE1; the interaction is direct, regulated by phosphorylation and is probably required for targeting to growing microtubule plus ends. Interacts with KIF18B at microtubule tips; this interaction increases the affinity of both partners for microtubule plus ends and is required for robust microtubule depolymerization. Phosphorylation by AURKA or AURKB strongly reduces KIF18B-binding.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (By similarity). Nucleus (By similarity). Chromosome, centromere. Chromosome, centromere, kinetochore. Note=Associates with the microtubule network at the growing distal tip (the plus-end) of microtubules, probably through interaction with MTUS2/TIP150 and MAPRE1 (By similarity). Association with microtubule plus ends is also mediated by interaction with KIF18B. Centromeric localization requires the presence of BUB1 and SGOL2.
TISSUE SPECIFICITY: Expressed at high levels in thymus and testis, at low levels in small intestine, the mucosal lining of colon, and placenta, and at very low levels in spleen and ovary; expression is not detected in prostate, peripheral blood Leukocytes, heart, brain, lung, liver, skeletal muscle, kidney or pancreas. Isoform 2 is testis-specific.
DEVELOPMENTAL STAGE: Isoform 2 is expressed in fetal testis.
DOMAIN: The microtubule tip localization signal (MtLS) motif; mediates interaction with MAPRE1 and targeting to the growing microtubule plus ends.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR. Phosphorylation by AURKB, regulates association with centromeres and kinetochores and the microtubule depolymerization activity.
SIMILARITY: Belongs to the kinesin-like protein family. MCAK/KIF2 subfamily.
SIMILARITY: Contains 1 kinesin-motor domain.

-  Primer design for this transcript
 

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Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D004997 Ethinyl Estradiol
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • D015058 1-Naphthylisothiocyanate
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C063002 2,3-dimethoxy-1,4-naphthoquinone
  • C010914 2,4-diaminotoluene
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • C082164 4-methoxycinnamate methyl ester
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.97 RPKM in Testis
Total median expression: 134.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.4096-0.306 Picture PostScript Text
3' UTR -199.00588-0.338 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF16796 - Microtubule binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2HEH - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q99661
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity
GO:0019237 centromeric DNA binding
GO:0051010 microtubule plus-end binding

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0007018 microtubule-based movement
GO:0007019 microtubule depolymerization
GO:0007049 cell cycle
GO:0007059 chromosome segregation
GO:0007080 mitotic metaphase plate congression
GO:0008283 cell proliferation
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity
GO:0051301 cell division
GO:0051310 metaphase plate congression
GO:0051315 attachment of mitotic spindle microtubules to kinetochore
GO:0051983 regulation of chromosome segregation

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane
GO:0035371 microtubule plus-end
GO:0005881 cytoplasmic microtubule


-  Descriptions from all associated GenBank mRNAs
  AB264115 - Homo sapiens MCAK/KIF2c V1 mRNA for mitotic-centromere-associated kinesin/Kinesin family member 2c V1, complete cds.
HM005691 - Homo sapiens clone HTL-T-68n testis tissue sperm-binding protein Li 68n mRNA, complete cds.
LF383899 - JP 2014500723-A/191402: Polycomb-Associated Non-Coding RNAs.
AK312606 - Homo sapiens cDNA, FLJ92983.
AK300756 - Homo sapiens cDNA FLJ54088 complete cds, highly similar to Kinesin-like protein KIF2C.
U63743 - Homo sapiens mitotic centromere-associated kinesin mRNA, complete cds.
BC008764 - Homo sapiens kinesin family member 2C, mRNA (cDNA clone MGC:1266 IMAGE:3347571), complete cds.
BC014924 - Homo sapiens kinesin family member 2C, mRNA (cDNA clone MGC:17895 IMAGE:3909438), complete cds.
AK290688 - Homo sapiens cDNA FLJ75664 complete cds, highly similar to Homo sapiens kinesin family member 2C (KIF2C), mRNA.
CU677119 - Synthetic construct Homo sapiens gateway clone IMAGE:100017467 5' read KIF2C mRNA.
AB590244 - Synthetic construct DNA, clone: pFN21AE0500, Homo sapiens KIF2C gene for kinesin family member 2C, without stop codon, in Flexi system.
CR450302 - Homo sapiens full open reading frame cDNA clone RZPDo834D061D for gene KIF2C, kinesin family member 2C; complete cds; without stopcodon.
BT006759 - Homo sapiens kinesin-like 6 (mitotic centromere-associated kinesin) mRNA, complete cds.
DQ893800 - Synthetic construct Homo sapiens clone IMAGE:100008260; FLH164510.01L; RZPDo839H01161D kinesin family member 2C (KIF2C) gene, encodes complete protein.
EU176178 - Synthetic construct Homo sapiens clone IMAGE:100006333; FLH164517.01X; RZPDo839F02250D kinesin family member 2C (KIF2C) gene, encodes complete protein.
KJ893198 - Synthetic construct Homo sapiens clone ccsbBroadEn_02592 KIF2C gene, encodes complete protein.
KJ898328 - Synthetic construct Homo sapiens clone ccsbBroadEn_07722 KIF2C gene, encodes complete protein.
AK302267 - Homo sapiens cDNA FLJ53680 complete cds, highly similar to Kinesin-like protein KIF2C.
AY026505 - Homo sapiens testis specific mitotic centromere-associated kinesin mRNA, complete cds.
MA619476 - JP 2018138019-A/191402: Polycomb-Associated Non-Coding RNAs.
AK124208 - Homo sapiens cDNA FLJ42214 fis, clone THYMU2037208.
JD490273 - Sequence 471297 from Patent EP1572962.
JD244914 - Sequence 225938 from Patent EP1572962.
CU679091 - Synthetic construct Homo sapiens gateway clone IMAGE:100020553 5' read KIF2C mRNA.
LF356304 - JP 2014500723-A/163807: Polycomb-Associated Non-Coding RNAs.
LF356303 - JP 2014500723-A/163806: Polycomb-Associated Non-Coding RNAs.
MA591881 - JP 2018138019-A/163807: Polycomb-Associated Non-Coding RNAs.
MA591880 - JP 2018138019-A/163806: Polycomb-Associated Non-Coding RNAs.
LF356301 - JP 2014500723-A/163804: Polycomb-Associated Non-Coding RNAs.
LF356300 - JP 2014500723-A/163803: Polycomb-Associated Non-Coding RNAs.
BC032038 - Homo sapiens, clone IMAGE:5166633, mRNA, partial cds.
LF356299 - JP 2014500723-A/163802: Polycomb-Associated Non-Coding RNAs.
LF206797 - JP 2014500723-A/14300: Polycomb-Associated Non-Coding RNAs.
LF358036 - JP 2014500723-A/165539: Polycomb-Associated Non-Coding RNAs.
LF356298 - JP 2014500723-A/163801: Polycomb-Associated Non-Coding RNAs.
LF356297 - JP 2014500723-A/163800: Polycomb-Associated Non-Coding RNAs.
LF358035 - JP 2014500723-A/165538: Polycomb-Associated Non-Coding RNAs.
LF356296 - JP 2014500723-A/163799: Polycomb-Associated Non-Coding RNAs.
LF358034 - JP 2014500723-A/165537: Polycomb-Associated Non-Coding RNAs.
LF356295 - JP 2014500723-A/163798: Polycomb-Associated Non-Coding RNAs.
LF356294 - JP 2014500723-A/163797: Polycomb-Associated Non-Coding RNAs.
LF356293 - JP 2014500723-A/163796: Polycomb-Associated Non-Coding RNAs.
JD519790 - Sequence 500814 from Patent EP1572962.
JD355837 - Sequence 336861 from Patent EP1572962.
JD056057 - Sequence 37081 from Patent EP1572962.
JD069026 - Sequence 50050 from Patent EP1572962.
JD110359 - Sequence 91383 from Patent EP1572962.
JD454697 - Sequence 435721 from Patent EP1572962.
JD406552 - Sequence 387576 from Patent EP1572962.
MA591878 - JP 2018138019-A/163804: Polycomb-Associated Non-Coding RNAs.
MA591877 - JP 2018138019-A/163803: Polycomb-Associated Non-Coding RNAs.
MA591876 - JP 2018138019-A/163802: Polycomb-Associated Non-Coding RNAs.
MA442374 - JP 2018138019-A/14300: Polycomb-Associated Non-Coding RNAs.
MA593613 - JP 2018138019-A/165539: Polycomb-Associated Non-Coding RNAs.
MA591875 - JP 2018138019-A/163801: Polycomb-Associated Non-Coding RNAs.
MA591874 - JP 2018138019-A/163800: Polycomb-Associated Non-Coding RNAs.
MA593612 - JP 2018138019-A/165538: Polycomb-Associated Non-Coding RNAs.
MA591873 - JP 2018138019-A/163799: Polycomb-Associated Non-Coding RNAs.
MA593611 - JP 2018138019-A/165537: Polycomb-Associated Non-Coding RNAs.
MA591872 - JP 2018138019-A/163798: Polycomb-Associated Non-Coding RNAs.
MA591871 - JP 2018138019-A/163797: Polycomb-Associated Non-Coding RNAs.
MA591870 - JP 2018138019-A/163796: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99661 (Reactome details) participates in the following event(s):

R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-990489 Kinesin-13 is a dimer
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-983189 Kinesins
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-109582 Hemostasis
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1640170 Cell Cycle
R-HSA-162582 Signal Transduction
R-HSA-2132295 MHC class II antigen presentation
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-1280218 Adaptive Immune System
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-168256 Immune System
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: B3ITR9, ENST00000372224.1, ENST00000372224.2, ENST00000372224.3, ENST00000372224.4, ENST00000372224.5, ENST00000372224.6, ENST00000372224.7, ENST00000372224.8, KIF2C_HUMAN, KNSL6, NM_006845, Q5JR88, Q6ICU1, Q96C18, Q96HB8, Q99661, Q9BWV8, uc318jtc.1, uc318jtc.2
UCSC ID: ENST00000372224.9_10
RefSeq Accession: NM_006845.4
Protein: Q99661 (aka KIF2C_HUMAN or KF2C_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.