Human Gene KIF2A (ENST00000407818.8_9) from GENCODE V47lift37
  Description: kinesin family member 2A, transcript variant 2 (from RefSeq NM_001098511.3)
Gencode Transcript: ENST00000407818.8_9
Gencode Gene: ENSG00000068796.19_19
Transcript (Including UTRs)
   Position: hg19 chr5:61,602,033-61,686,852 Size: 84,820 Total Exon Count: 21 Strand: +
Coding Region
   Position: hg19 chr5:61,602,300-61,681,396 Size: 79,097 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:61,602,033-61,686,852)mRNA (may differ from genome)Protein (744 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KIF2A_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF2A; AltName: Full=Kinesin-2; Short=hK2;
FUNCTION: Plus end-directed microtubule-dependent motor required for normal brain development. May regulate microtubule dynamics during axonal growth. Required for normal progression through mitosis. Required for normal congress of chromosomes at the metaphase plate. Required for normal spindle dynamics during mitosis. Promotes spindle turnover. Implicated in formation of bipolar mitotic spindles. Has microtubule depolymerization activity.
SUBUNIT: Interacts with AURKA, PSRC1 and PLK1.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytoskeleton, spindle pole. Cytoplasm, cytoskeleton, spindle. Note=Localized to the spindle microtubules and spindle poles from prophase to metaphase. Efficient targeting to spindle microtubules and spindle poles requires the kinase activity of PLK1. Recruited to mitotic spindles by interaction with PSRC1.
MISCELLANEOUS: HeLa cells lacking KIF2A show asymmetric or monopolar mitotic spindles. Osteosarcoma cells (U2OS) lacking KIF2A or KIF2B show disorganised or monopolar mitotic spindles.
SIMILARITY: Belongs to the kinesin-like protein family. MCAK/KIF2 subfamily.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=AAP84320.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KIF2A
Diseases sorted by gene-association score: cortical dysplasia, complex, with other brain malformations 3* (1330), band heterotopia (9), subcortical band heterotopia (8), squamous cell carcinoma of the oral tongue (7), pachygyria (6), persistent hyperplastic primary vitreous (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 27.72 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 285.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -85.40267-0.320 Picture PostScript Text
3' UTR -1327.305456-0.243 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF16796 - Microtubule binding

SCOP Domains:
63748 - Tudor/PWWP/MBT
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2GRY - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O00139
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0007018 microtubule-based movement
GO:0007019 microtubule depolymerization
GO:0007049 cell cycle
GO:0007052 mitotic spindle organization
GO:0007275 multicellular organism development
GO:0007399 nervous system development
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030154 cell differentiation
GO:0030334 regulation of cell migration
GO:0051301 cell division
GO:0090307 mitotic spindle assembly

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule
GO:0016020 membrane
GO:0016604 nuclear body
GO:0097228 sperm principal piece
GO:0005876 spindle microtubule


-  Descriptions from all associated GenBank mRNAs
  BC047544 - Homo sapiens cDNA clone IMAGE:5298603, containing frame-shift errors.
AK297347 - Homo sapiens cDNA FLJ56002 complete cds, highly similar to Kinesin-like protein KIF2.
AK307880 - Homo sapiens cDNA, FLJ97828.
EF560716 - Homo sapiens clone DKFZp781B0725 KIF2A protein (KIF2A) mRNA, complete cds.
EF560728 - Homo sapiens clone DKFZp686D19248 KIF2A protein (KIF2A) mRNA, complete cds.
EU832810 - Synthetic construct Homo sapiens clone HAIB:100067839; DKFZo008E0633 kinesin heavy chain member 2A protein (KIF2A) gene, encodes complete protein.
GQ129246 - Synthetic construct Homo sapiens clone HAIB:100068500; DKFZo004E0634 kinesin heavy chain member 2A protein (KIF2A) gene, partial cds.
AK315866 - Homo sapiens cDNA, FLJ79515 complete cds, highly similar to Kinesin-like protein KIF2.
AK302270 - Homo sapiens cDNA FLJ55663 complete cds, highly similar to Kinesin-like protein KIF2.
Y08319 - H.sapiens mRNA for kinesin-2.
BC031828 - Homo sapiens kinesin heavy chain member 2A, mRNA (cDNA clone MGC:24890 IMAGE:4932771), complete cds.
DQ894527 - Synthetic construct Homo sapiens clone IMAGE:100008987; FLH171275.01L; RZPDo839G0799D kinesin heavy chain member 2 (KIF2) gene, encodes complete protein.
DQ891347 - Synthetic construct clone IMAGE:100003977; FLH171279.01X; RZPDo839G07100D kinesin heavy chain member 2 (KIF2) gene, encodes complete protein.
CU689242 - Synthetic construct Homo sapiens gateway clone IMAGE:100018412 5' read KIF2A mRNA.
AB590315 - Synthetic construct DNA, clone: pFN21AE0499, Homo sapiens KIF2A gene for kinesin heavy chain member 2A, without stop codon, in Flexi system.
KJ901541 - Synthetic construct Homo sapiens clone ccsbBroadEn_10935 KIF2A gene, encodes complete protein.
AY317140 - Homo sapiens kinesin heavy chain member 2 mRNA, complete cds.
AY429552 - Homo sapiens KIF2 mRNA sequence; alternatively spliced.
AK057153 - Homo sapiens cDNA FLJ32591 fis, clone SPLEN2000450, weakly similar to KINESIN-LIKE PROTEIN KIF2.
JD043502 - Sequence 24526 from Patent EP1572962.
JD390216 - Sequence 371240 from Patent EP1572962.
JD206577 - Sequence 187601 from Patent EP1572962.
JD473384 - Sequence 454408 from Patent EP1572962.
JD083823 - Sequence 64847 from Patent EP1572962.
JD386607 - Sequence 367631 from Patent EP1572962.
JD372083 - Sequence 353107 from Patent EP1572962.
JD292740 - Sequence 273764 from Patent EP1572962.
JD527832 - Sequence 508856 from Patent EP1572962.
JD470435 - Sequence 451459 from Patent EP1572962.
JD300396 - Sequence 281420 from Patent EP1572962.
JD220458 - Sequence 201482 from Patent EP1572962.
JD545033 - Sequence 526057 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O00139 (Reactome details) participates in the following event(s):

R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-990489 Kinesin-13 is a dimer
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-983189 Kinesins
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-109582 Hemostasis
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1640170 Cell Cycle
R-HSA-162582 Signal Transduction
R-HSA-2132295 MHC class II antigen presentation
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-1280218 Adaptive Immune System
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-168256 Immune System
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: A5YM42, A5YM54, B4DY54, D3DW97, E9PB70, ENST00000407818.1, ENST00000407818.2, ENST00000407818.3, ENST00000407818.4, ENST00000407818.5, ENST00000407818.6, ENST00000407818.7, KIF2, KIF2A_HUMAN, KNS2, NM_001098511, O00139, Q7Z5I3, Q8N5Q7, uc319eao.1, uc319eao.2
UCSC ID: ENST00000407818.8_9
RefSeq Accession: NM_001098511.3
Protein: O00139 (aka KIF2A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.