Human Gene KIF20B (ENST00000260753.8_5) from GENCODE V47lift37
  Description: kinesin family member 20B, transcript variant 5 (from RefSeq NR_168375.1)
Gencode Transcript: ENST00000260753.8_5
Gencode Gene: ENSG00000138182.15_10
Transcript (Including UTRs)
   Position: hg19 chr10:91,461,367-91,534,696 Size: 73,330 Total Exon Count: 33 Strand: +
Coding Region
   Position: hg19 chr10:91,465,052-91,533,805 Size: 68,754 Coding Exon Count: 32 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:91,461,367-91,534,696)mRNA (may differ from genome)Protein (1780 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KI20B_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF20B; AltName: Full=Cancer/testis antigen 90; Short=CT90; AltName: Full=Kinesin-related motor interacting with PIN1; AltName: Full=M-phase phosphoprotein 1; Short=MPP1;
FUNCTION: Plus-end-directed motor enzyme that is required for completion of cytokinesis.
SUBUNIT: Interacts with PIN1.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Cytoplasm, cytoskeleton, spindle. Note=Localizes mainly in the nucleus during interphase although it is also detected in the cytoplasm without clear association with microtubules. A 2-3 fold expression increase is seen as cells progress from G1 to G2/M phase. During prophase and metaphase it is found throughout the cytoplasm and at anaphase accumulates at the midplan of the cell and forms a distinct band extending across the spindle midzone. At anaphase it is concentrated in the mid-body.
TISSUE SPECIFICITY: Brain, ovary, kidney and testis.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the kinesin-like protein family.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=AAH46134.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH58913.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH93089.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAI08689.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=BAB15043.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=CAI12885.1; Type=Erroneous gene model prediction; Sequence=CAI16829.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.97 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 46.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.2072-0.239 Picture PostScript Text
3' UTR -191.40891-0.215 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain
PF16796 - Microtubule binding

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

ModBase Predicted Comparative 3D Structure on Q96Q89
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed
GO:0016887 ATPase activity
GO:0042803 protein homodimerization activity
GO:0050699 WW domain binding

Biological Process:
GO:0001843 neural tube closure
GO:0007018 microtubule-based movement
GO:0007049 cell cycle
GO:0007050 cell cycle arrest
GO:0007088 regulation of mitotic nuclear division
GO:0008284 positive regulation of cell proliferation
GO:0032467 positive regulation of cytokinesis
GO:0035372 protein localization to microtubule
GO:0048812 neuron projection morphogenesis
GO:0051301 cell division
GO:0070201 regulation of establishment of protein localization
GO:0090316 positive regulation of intracellular protein transport
GO:1903438 positive regulation of mitotic cytokinetic process
GO:2000114 regulation of establishment of cell polarity
GO:2001222 regulation of neuron migration
GO:2001224 positive regulation of neuron migration

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton
GO:0030424 axon
GO:0030426 growth cone
GO:0030496 midbody
GO:0042995 cell projection
GO:0048471 perinuclear region of cytoplasm
GO:0051233 spindle midzone
GO:0070938 contractile ring
GO:0097431 mitotic spindle pole
GO:1990023 mitotic spindle midzone


-  Descriptions from all associated GenBank mRNAs
  AY282406 - Homo sapiens clone 1C12 M-phase phosphoprotein 1 (MPHOSPH1) mRNA, partial cds.
AL117496 - Homo sapiens mRNA; cDNA DKFZp434B0435 (from clone DKFZp434B0435).
AB033337 - Homo sapiens KRMP1 mRNA for mitotic kinesin-related protein, complete cds.
BC042130 - Homo sapiens, Similar to M-phase phosphoprotein 1, clone IMAGE:4856992, mRNA.
BC005221 - Homo sapiens M-phase phosphoprotein 1, mRNA (cDNA clone IMAGE:3685397), partial cds.
AL137392 - Homo sapiens mRNA; cDNA DKFZp434I152 (from clone DKFZp434I152).
AY282407 - Homo sapiens clone 1L9 M-phase phosphoprotein 1 (MPHOSPH1) mRNA, partial cds.
AK290439 - Homo sapiens cDNA FLJ75531 partial cds.
BC012585 - Homo sapiens cDNA clone IMAGE:4332982, containing frame-shift errors.
BC108688 - Homo sapiens kinesin family member 20B, mRNA (cDNA clone IMAGE:3893085), partial cds.
BC058913 - Homo sapiens kinesin family member 20B, mRNA (cDNA clone IMAGE:4536502), partial cds.
BC093089 - Homo sapiens kinesin family member 20B, mRNA (cDNA clone IMAGE:30353122), partial cds.
BC046134 - Homo sapiens kinesin family member 20B, mRNA (cDNA clone IMAGE:5786770), partial cds.
AK074336 - Homo sapiens cDNA FLJ23756 fis, clone HEP17607, highly similar to M-phase phosphoprotein 1.
AK024959 - Homo sapiens cDNA: FLJ21306 fis, clone COL02125.
U93121 - Homo sapiens M-phase phosphoprotein-1 mRNA, partial cds.
AY739715 - Homo sapiens M-phase phosphoprotein 1 (MPHOSPH1) mRNA, partial cds.
L16782 - Human putative M phase phosphoprotein 1 (MPP1) mRNA, partial cds.
AK025628 - Homo sapiens cDNA: FLJ21975 fis, clone HEP05866.
JD274042 - Sequence 255066 from Patent EP1572962.
JD244747 - Sequence 225771 from Patent EP1572962.
JD093641 - Sequence 74665 from Patent EP1572962.
JD197310 - Sequence 178334 from Patent EP1572962.
JD491259 - Sequence 472283 from Patent EP1572962.
JD492745 - Sequence 473769 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96Q89 (Reactome details) participates in the following event(s):

R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-983189 Kinesins
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-109582 Hemostasis
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: A8MXM7, ENST00000260753.1, ENST00000260753.2, ENST00000260753.3, ENST00000260753.4, ENST00000260753.5, ENST00000260753.6, ENST00000260753.7, KI20B_HUMAN, KIF20B , KRMP1 , MPHOSPH1 , NR_168375, O43277, Q09471, Q2KQ73, Q32NE1, Q561V3, Q58EX8, Q5T9M8, Q5T9M9, Q5T9N0, Q5T9N1, Q7KZ68, Q7Z5E0, Q7Z5E1, Q7Z6M9, Q86X82, Q96Q89, Q9H3R8, Q9H6Q9, Q9H755, Q9NTC1, Q9UFR5, uc317glr.1
UCSC ID: ENST00000260753.8_5
RefSeq Accession: NM_016195.4
Protein: Q96Q89 (aka KI20B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.