Human Gene KANK2 (ENST00000586659.6_11) from GENCODE V47lift37
  Description: KN motif and ankyrin repeat domains 2, transcript variant 19 (from RefSeq NM_001379563.1)
Gencode Transcript: ENST00000586659.6_11
Gencode Gene: ENSG00000197256.11_21
Transcript (Including UTRs)
   Position: hg19 chr19:11,274,946-11,308,221 Size: 33,276 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr19:11,277,234-11,305,187 Size: 27,954 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:11,274,946-11,308,221)mRNA (may differ from genome)Protein (851 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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-  Comments and Description Text from UniProtKB
  ID: KANK2_HUMAN
DESCRIPTION: RecName: Full=KN motif and ankyrin repeat domain-containing protein 2; AltName: Full=Ankyrin repeat domain-containing protein 25; AltName: Full=Matrix-remodeling-associated protein 3; AltName: Full=SRC-1-interacting protein; Short=SIP; Short=SRC-interacting protein; Short=SRC1-interacting protein;
FUNCTION: Involved in transcription regulation by sequestering nuclear receptor coactivators, such as NCOA1, NCOA2 and NCOA3, in the cytoplasm; the function is deregulated by phosphorylation. May be involved in the control of cytoskeleton formation by regulating actin polymerization. Involved in regulation of caspase- independent apoptosis; proposed to sequester AIFM1 in mitochondria and apoptotic stimuli lead to its proteasomal degradation allowing the release of AIFM1 to the nucleus. May be involved in promotion of cell proliferation.
SUBUNIT: Interacts (phosphorylated) with NCOA1; NCOA2 AND NCOA3. Interacts with AIFM1.
INTERACTION: O95831:AIFM1; NbExp=4; IntAct=EBI-6244894, EBI-356440;
SUBCELLULAR LOCATION: Cytoplasm. Mitochondrion.
TISSUE SPECIFICITY: Strongly expressed in cervix, colon, heart, kidney and lung. Expressed in kidney glomerular podocytes and mesangial cells (at protein level).
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR. Phosphorylated by CaMK2 upon estrogen stimulation.
SIMILARITY: Contains 5 ANK repeats.
SEQUENCE CAUTION: Sequence=BAA92081.1; Type=Erroneous initiation; Sequence=BAA96042.2; Type=Erroneous initiation; Sequence=BAB14531.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KANK2
Diseases sorted by gene-association score: palmoplantar keratoderma and woolly hair* (1680), pseudoainhum (18), striate palmoplantar keratoderma (10)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 152.65 RPKM in Colon - Sigmoid
Total median expression: 2247.42 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -85.30339-0.252 Picture PostScript Text
3' UTR -751.302288-0.328 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR021939 - KN_motif

Pfam Domains:
PF00023 - Ankyrin repeat
PF12075 - KN motif
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
48403 - Ankyrin repeat

ModBase Predicted Comparative 3D Structure on Q63ZY3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006915 apoptotic process
GO:0008285 negative regulation of cell proliferation
GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway
GO:0043069 negative regulation of programmed cell death
GO:0070563 negative regulation of vitamin D receptor signaling pathway
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  AL117489 - Homo sapiens mRNA; cDNA DKFZp434N161 (from clone DKFZp434N161).
BC032745 - Homo sapiens KN motif and ankyrin repeat domains 2, mRNA (cDNA clone IMAGE:5574690), with apparent retained intron.
AB040951 - Homo sapiens KIAA1518 mRNA for KIAA1518 protein.
AB284125 - Homo sapiens Kank2 mRNA for kidney ankyrin repeat-containing protein 2, complete cds.
BC030030 - Homo sapiens ankyrin repeat domain 25, mRNA (cDNA clone IMAGE:3605290), partial cds.
BC049201 - Homo sapiens ankyrin repeat domain 25, mRNA (cDNA clone IMAGE:3923697), partial cds.
JD054892 - Sequence 35916 from Patent EP1572962.
JD493347 - Sequence 474371 from Patent EP1572962.
JD537498 - Sequence 518522 from Patent EP1572962.
JD170690 - Sequence 151714 from Patent EP1572962.
JD280403 - Sequence 261427 from Patent EP1572962.
JD137301 - Sequence 118325 from Patent EP1572962.
JD060889 - Sequence 41913 from Patent EP1572962.
JD513866 - Sequence 494890 from Patent EP1572962.
JD113985 - Sequence 95009 from Patent EP1572962.
CR457388 - Homo sapiens full open reading frame cDNA clone RZPDo834E0610D for gene ANKRD25, ankyrin repeat domain 25; complete cds, incl. stopcodon.
JD458994 - Sequence 440018 from Patent EP1572962.
JD108672 - Sequence 89696 from Patent EP1572962.
JD137507 - Sequence 118531 from Patent EP1572962.
BC105989 - Homo sapiens KN motif and ankyrin repeat domains 2, mRNA (cDNA clone IMAGE:5108975), partial cds.
BC082762 - Homo sapiens KN motif and ankyrin repeat domains 2, mRNA (cDNA clone MGC:99699 IMAGE:6497026), complete cds.
JD134979 - Sequence 116003 from Patent EP1572962.
JD368454 - Sequence 349478 from Patent EP1572962.
JD292622 - Sequence 273646 from Patent EP1572962.
JD105926 - Sequence 86950 from Patent EP1572962.
JD517635 - Sequence 498659 from Patent EP1572962.
JD365262 - Sequence 346286 from Patent EP1572962.
JD097520 - Sequence 78544 from Patent EP1572962.
JD512567 - Sequence 493591 from Patent EP1572962.
JD510907 - Sequence 491931 from Patent EP1572962.
JD180095 - Sequence 161119 from Patent EP1572962.
JD192792 - Sequence 173816 from Patent EP1572962.
JD336274 - Sequence 317298 from Patent EP1572962.
JD421133 - Sequence 402157 from Patent EP1572962.
JD327201 - Sequence 308225 from Patent EP1572962.
JD106658 - Sequence 87682 from Patent EP1572962.
JD411098 - Sequence 392122 from Patent EP1572962.
JD096061 - Sequence 77085 from Patent EP1572962.
JD425288 - Sequence 406312 from Patent EP1572962.
AK002094 - Homo sapiens cDNA FLJ11232 fis, clone PLACE1008429, weakly similar to ANKYRIN HOMOLOG PRECURSOR.
JD116935 - Sequence 97959 from Patent EP1572962.
JD425287 - Sequence 406311 from Patent EP1572962.
JD284123 - Sequence 265147 from Patent EP1572962.
JD329955 - Sequence 310979 from Patent EP1572962.
JD145599 - Sequence 126623 from Patent EP1572962.
JD558905 - Sequence 539929 from Patent EP1572962.
JD445608 - Sequence 426632 from Patent EP1572962.
JD277336 - Sequence 258360 from Patent EP1572962.
JD173989 - Sequence 155013 from Patent EP1572962.
JD265181 - Sequence 246205 from Patent EP1572962.
JD152548 - Sequence 133572 from Patent EP1572962.
JD144516 - Sequence 125540 from Patent EP1572962.
JD265180 - Sequence 246204 from Patent EP1572962.
JD265179 - Sequence 246203 from Patent EP1572962.
JD495585 - Sequence 476609 from Patent EP1572962.
JD221472 - Sequence 202496 from Patent EP1572962.
JD144515 - Sequence 125539 from Patent EP1572962.
JD295735 - Sequence 276759 from Patent EP1572962.
JD550872 - Sequence 531896 from Patent EP1572962.
JD234756 - Sequence 215780 from Patent EP1572962.
JD109674 - Sequence 90698 from Patent EP1572962.
JD298961 - Sequence 279985 from Patent EP1572962.
JD314767 - Sequence 295791 from Patent EP1572962.
JD464393 - Sequence 445417 from Patent EP1572962.
JD095485 - Sequence 76509 from Patent EP1572962.
BC098105 - Homo sapiens KN motif and ankyrin repeat domains 2, mRNA (cDNA clone MGC:119706 IMAGE:40012030), complete cds.
BC098286 - Homo sapiens KN motif and ankyrin repeat domains 2, mRNA (cDNA clone MGC:119708 IMAGE:40012033), complete cds.
BC098312 - Homo sapiens KN motif and ankyrin repeat domains 2, mRNA (cDNA clone MGC:119707 IMAGE:40012032), complete cds.
JD186001 - Sequence 167025 from Patent EP1572962.
AY639929 - Homo sapiens SRC-1 interacting protein mRNA, complete cds.
AB384227 - Synthetic construct DNA, clone: pF1KSDA1518, Homo sapiens ANKRD25 gene for ankyrin repeat domain-containing protein 25, complete cds, without stop codon, in Flexi system.
AB528156 - Synthetic construct DNA, clone: pF1KE1085, Homo sapiens KANK2 gene for KN motif and ankyrin repeat domain-containing protein 2, without stop codon, in Flexi system.
AK023332 - Homo sapiens cDNA FLJ13270 fis, clone OVARC1000999, weakly similar to ANKYRIN HOMOLOG PRECURSOR.
AK000011 - Homo sapiens cDNA FLJ20004 fis, clone ADKA02391.
AK225038 - Homo sapiens mRNA for ankyrin repeat domain 25 variant, clone: adKA02391.
JD063668 - Sequence 44692 from Patent EP1572962.
CU687364 - Synthetic construct Homo sapiens gateway clone IMAGE:100023173 5' read ANKRD25 mRNA.
JD129153 - Sequence 110177 from Patent EP1572962.
JD479767 - Sequence 460791 from Patent EP1572962.
JD219689 - Sequence 200713 from Patent EP1572962.
JD067221 - Sequence 48245 from Patent EP1572962.
JD103679 - Sequence 84703 from Patent EP1572962.
JD330964 - Sequence 311988 from Patent EP1572962.
JD043043 - Sequence 24067 from Patent EP1572962.
JD331147 - Sequence 312171 from Patent EP1572962.
JD316865 - Sequence 297889 from Patent EP1572962.
JD140517 - Sequence 121541 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ANKRD25, B0I1P4, ENST00000586659.1, ENST00000586659.2, ENST00000586659.3, ENST00000586659.4, ENST00000586659.5, KANK2_HUMAN, KIAA1518, MXRA3, NM_001379563, Q3KQZ3, Q63ZY3, Q6GUF5, Q9H8S4, Q9NUP0, Q9P210, SIP, uc326qhz.1, uc326qhz.2
UCSC ID: ENST00000586659.6_11
RefSeq Accession: NM_001136191.3
Protein: Q63ZY3 (aka KANK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.