Human Gene ITGAM (ENST00000544665.9_10) from GENCODE V47lift37
  Description: integrin subunit alpha M, transcript variant 2 (from RefSeq NM_000632.4)
Gencode Transcript: ENST00000544665.9_10
Gencode Gene: ENSG00000169896.18_14
Transcript (Including UTRs)
   Position: hg19 chr16:31,271,296-31,344,198 Size: 72,903 Total Exon Count: 30 Strand: +
Coding Region
   Position: hg19 chr16:31,271,386-31,343,028 Size: 71,643 Coding Exon Count: 30 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:31,271,296-31,344,198)mRNA (may differ from genome)Protein (1152 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ITAM_HUMAN
DESCRIPTION: RecName: Full=Integrin alpha-M; AltName: Full=CD11 antigen-like family member B; AltName: Full=CR-3 alpha chain; AltName: Full=Cell surface glycoprotein MAC-1 subunit alpha; AltName: Full=Leukocyte adhesion receptor MO1; AltName: Full=Neutrophil adherence receptor; AltName: CD_antigen=CD11b; Flags: Precursor;
FUNCTION: Integrin alpha-M/beta-2 is implicated in various adhesive interactions of monocytes, macrophages and granulocytes as well as in mediating the uptake of complement-coated particles. It is identical with CR-3, the receptor for the iC3b fragment of the third complement component. It probably recognizes the R-G-D peptide in C3b. Integrin alpha-M/beta-2 is also a receptor for fibrinogen, factor X and ICAM1. It recognizes P1 and P2 peptides of fibrinogen gamma chain.
SUBUNIT: Heterodimer of an alpha and a beta subunit. Alpha-M associates with beta-2. Interacts with JAM3.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Predominantly expressed in monocytes and granulocytes.
DOMAIN: The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavage.
DISEASE: Genetic variations in ITGAM has been associated with susceptibility to systemic lupus erythematosus type 6 (SLEB6) [MIM:609939]. Systemic lupus erythematosus (SLE) is a chronic, inflammatory and often febrile multisystemic disorder of connective tissue. It affects principally the skin, joints, kidneys and serosal membranes. It is thought to represent a failure of the regulatory mechanisms of the autoimmune system.
SIMILARITY: Belongs to the integrin alpha chain family.
SIMILARITY: Contains 7 FG-GAP repeats.
SIMILARITY: Contains 1 VWFA domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ITGAM
Diseases sorted by gene-association score: systemic lupus erythematous, association with 6* (550), itgam-related susceptibility to systemic lupus erythematosus* (100), shwartzman phenomenon (14), leukocyte adhesion deficiency (14), granulocytopenia (13), lymphocytic vasculitis (12), aspiration pneumonia (10), chronic monocytic leukemia (10), leishmaniasis (10), chronic venous insufficiency (8), pertussis (8), periodontosis (7), monocytic leukemia (7), cohen syndrome (7), chronic eosinophilic pneumonia (7), peritonitis (6), venous insufficiency (6), bronchopulmonary dysplasia (5), penicilliosis (5), systemic lupus erythematosus (4), chronic nk-cell lymphocytosis (4), xanthogranulomatous cholecystitis (4), asthma (4), wegener granulomatosis (2), essential thrombocythemia (2), myocardial infarction (1), leukemia, acute myeloid (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 73.35 RPKM in Whole Blood
Total median expression: 195.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.3090-0.226 Picture PostScript Text
3' UTR -398.501170-0.341 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013517 - FG-GAP
IPR013519 - Int_alpha_beta-p
IPR000413 - Integrin_alpha
IPR013649 - Integrin_alpha-2
IPR018184 - Integrin_alpha_C_CS
IPR002035 - VWF_A

Pfam Domains:
PF00092 - von Willebrand factor type A domain
PF00357 - Integrin alpha cytoplasmic region
PF01839 - FG-GAP repeat
PF08441 - Integrin alpha
PF13519 - von Willebrand factor type A domain

SCOP Domains:
69179 - Integrin domains
69318 - Integrin alpha N-terminal domain
53300 - vWA-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1A8X - Model 1BHO - X-ray MuPIT 1BHQ - X-ray MuPIT 1IDN - X-ray MuPIT 1IDO - X-ray MuPIT 1JLM - X-ray MuPIT 1M1U - X-ray MuPIT 1MF7 - X-ray MuPIT 1N9Z - X-ray MuPIT 1NA5 - X-ray MuPIT 2LKE - NMR 2LKJ - NMR 3Q3G - X-ray MuPIT 3QA3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P11215
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001851 complement component C3b binding
GO:0005515 protein binding
GO:0031072 heat shock protein binding
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0001774 microglial cell activation
GO:0002376 immune system process
GO:0006911 phagocytosis, engulfment
GO:0007155 cell adhesion
GO:0007229 integrin-mediated signaling pathway
GO:0010668 ectodermal cell differentiation
GO:0019221 cytokine-mediated signaling pathway
GO:0030198 extracellular matrix organization
GO:0032930 positive regulation of superoxide anion generation
GO:0034142 toll-like receptor 4 signaling pathway
GO:0043312 neutrophil degranulation
GO:0043315 positive regulation of neutrophil degranulation
GO:0045087 innate immune response
GO:0045963 negative regulation of dopamine metabolic process
GO:0050900 leukocyte migration
GO:0090314 positive regulation of protein targeting to membrane
GO:0097242 beta-amyloid clearance
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules
GO:1901216 positive regulation of neuron death
GO:1903980 positive regulation of microglial cell activation
GO:2000363 positive regulation of prostaglandin-E synthase activity

Cellular Component:
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0008305 integrin complex
GO:0009897 external side of plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0034688 integrin alphaM-beta2 complex
GO:0035579 specific granule membrane
GO:0044853 plasma membrane raft
GO:0045121 membrane raft
GO:0070062 extracellular exosome
GO:0070821 tertiary granule membrane


-  Descriptions from all associated GenBank mRNAs
  AK057856 - Homo sapiens cDNA FLJ25127 fis, clone CBR06564, highly similar to CELL SURFACE GLYCOPROTEIN MAC-1 ALPHA SUBUNIT PRECURSOR.
LQ740451 - Sequence 5 from Patent WO2018083189.
M18044 - Human CD11b (MAC-1/Mo1/CR3) leukocyte adhesion receptor alpha subunit mRNA, partial cds.
J03925 - Human Mac-1 gene encoding complement receptor type 3, CD11b, complete cds.
BC096346 - Homo sapiens integrin, alpha M (complement component 3 receptor 3 subunit), mRNA (cDNA clone MGC:117042 IMAGE:40008964), complete cds.
BC096347 - Homo sapiens integrin, alpha M (complement component 3 receptor 3 subunit), mRNA (cDNA clone MGC:117043 IMAGE:40008967), complete cds.
BC096348 - Homo sapiens integrin, alpha M (complement component 3 receptor 3 subunit), mRNA (cDNA clone MGC:117045 IMAGE:40008972), complete cds.
BC099660 - Homo sapiens integrin, alpha M (complement component 3 receptor 3 subunit), mRNA (cDNA clone MGC:117044 IMAGE:40008969), complete cds.
AK127637 - Homo sapiens cDNA FLJ45735 fis, clone JCMLC2000273, highly similar to Integrin alpha-M precursor.
AB384734 - Synthetic construct DNA, clone: pF1KB3043, Homo sapiens ITGAM gene for integrin alpha-M precursor, complete cds, without stop codon, in Flexi system.
KJ897069 - Synthetic construct Homo sapiens clone ccsbBroadEn_06463 ITGAM gene, encodes complete protein.
J04145 - Human neutrophil adherence receptor alpha-M subunit mRNA.
AY187247 - Homo sapiens ITGAM isoform 1 (ITGAM) mRNA, partial sequence; alternatively spliced.
AY187248 - Homo sapiens ITGAM isoform 2 (ITGAM) mRNA, partial sequence; alternatively spliced.
JD521350 - Sequence 502374 from Patent EP1572962.
JD147905 - Sequence 128929 from Patent EP1572962.
JD393569 - Sequence 374593 from Patent EP1572962.
JD099577 - Sequence 80601 from Patent EP1572962.
JD322068 - Sequence 303092 from Patent EP1572962.
JD374616 - Sequence 355640 from Patent EP1572962.
JD464845 - Sequence 445869 from Patent EP1572962.
LC458550 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: intgrinalpham.
LC458551 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant1.
LC458552 - Homo sapiens ITGAM mRNA for integrin alpha-M, clone: itgamvariant2.
LC458553 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant3.
LC458554 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant4.
LC458555 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant5.
LC458556 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant6.
LC458557 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant7.
LC458558 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant8.
LC458559 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant9.
LC458560 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant10.
LC458561 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant11.
LC458562 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant12.
LC458563 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant13.
LC458564 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant14.
LC458565 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant15.
LC458566 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant16.
LC458567 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant17.
LC458568 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant18.
LC458569 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant19.
LC458570 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant20.
LC458571 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant21.
LC458572 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant22.
LC458573 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant23.
LC458574 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant24.
LC458575 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant25.
LC458576 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant26.
LC458577 - Homo sapiens ITGAM mRNA for integrin alpha-M, partial cds, clone: itgamvariant27.
DL491356 - Novel nucleic acids.
DL489986 - Novel nucleic acids.
JD389699 - Sequence 370723 from Patent EP1572962.
JD251808 - Sequence 232832 from Patent EP1572962.
JD378913 - Sequence 359937 from Patent EP1572962.
JD534053 - Sequence 515077 from Patent EP1572962.
JD460932 - Sequence 441956 from Patent EP1572962.
JD347621 - Sequence 328645 from Patent EP1572962.
JD342768 - Sequence 323792 from Patent EP1572962.
JD363187 - Sequence 344211 from Patent EP1572962.
JD066005 - Sequence 47029 from Patent EP1572962.
JD214201 - Sequence 195225 from Patent EP1572962.
JD039565 - Sequence 20589 from Patent EP1572962.
JD381496 - Sequence 362520 from Patent EP1572962.
JD149886 - Sequence 130910 from Patent EP1572962.
JD302230 - Sequence 283254 from Patent EP1572962.
JD449396 - Sequence 430420 from Patent EP1572962.
JD494796 - Sequence 475820 from Patent EP1572962.
JD107386 - Sequence 88410 from Patent EP1572962.
JD566546 - Sequence 547570 from Patent EP1572962.
JD327894 - Sequence 308918 from Patent EP1572962.
JD224400 - Sequence 205424 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_granulocytesPathway - Adhesion and Diapedesis of Granulocytes
h_neutrophilPathway - Neutrophil and Its Surface Molecules
h_monocytePathway - Monocyte and its Surface Molecules

Reactome (by CSHL, EBI, and GO)

Protein P11215 (Reactome details) participates in the following event(s):

R-HSA-202727 Integrin alphaMbeta2 (MAC1) binds JAM3
R-HSA-2559439 CD14:LPS binds CR3
R-HSA-6799350 Exocytosis of specific granule membrane proteins
R-HSA-6798747 Exocytosis of tertiary granule membrane proteins
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-216083 Integrin cell surface interactions
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-6798695 Neutrophil degranulation
R-HSA-109582 Hemostasis
R-HSA-1474244 Extracellular matrix organization
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-168249 Innate Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: CD11B, CR3A, ENST00000544665.1, ENST00000544665.2, ENST00000544665.3, ENST00000544665.4, ENST00000544665.5, ENST00000544665.6, ENST00000544665.7, ENST00000544665.8, ITAM_HUMAN, NM_000632, P11215, Q4VAK0, Q4VAK1, Q4VAK2, uc324vtp.1, uc324vtp.2
UCSC ID: ENST00000544665.9_10
RefSeq Accession: NM_000632.4
Protein: P11215 (aka ITAM_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.