Human Gene IPO8 (ENST00000256079.9_7) from GENCODE V47lift37
  Description: importin 8, transcript variant 1 (from RefSeq NM_006390.4)
Gencode Transcript: ENST00000256079.9_7
Gencode Gene: ENSG00000133704.10_13
Transcript (Including UTRs)
   Position: hg19 chr12:30,781,922-30,848,803 Size: 66,882 Total Exon Count: 25 Strand: -
Coding Region
   Position: hg19 chr12:30,783,794-30,848,581 Size: 64,788 Coding Exon Count: 25 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:30,781,922-30,848,803)mRNA (may differ from genome)Protein (1037 aa)
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-  Comments and Description Text from UniProtKB
  ID: IPO8_HUMAN
DESCRIPTION: RecName: Full=Importin-8; Short=Imp8; AltName: Full=Ran-binding protein 8; Short=RanBP8;
FUNCTION: Seems to function in nuclear protein import, either by acting as autonomous nuclear transport receptor or as an adapter- like protein in association with the importin-beta subunit KPNB1. Acting autonomously, is thought to serve itself as receptor for nuclear localization signals (NLS) and to promote translocation of import substrates through the nuclear pore complex (NPC) by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro mediates the nuclear import of SRP19.
SUBUNIT: Forms a heterodimer with KPNB1. Interacts with SRP19. Binds directly to nuclear pore complexes.
INTERACTION: Q9UL18:EIF2C1; NbExp=2; IntAct=EBI-358808, EBI-527363; Q9UKV8:EIF2C2; NbExp=3; IntAct=EBI-358808, EBI-528269; Q9H9G7:EIF2C3; NbExp=5; IntAct=EBI-358808, EBI-2267883; Q9HCK5:EIF2C4; NbExp=3; IntAct=EBI-358808, EBI-2269696;
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity).
SIMILARITY: Belongs to the importin beta family.
SIMILARITY: Contains 1 importin N-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.64 RPKM in Nerve - Tibial
Total median expression: 427.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -74.90222-0.337 Picture PostScript Text
3' UTR -494.301872-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR013713 - Exportin/Importin_Cse1-like
IPR001494 - Importin-beta_N

Pfam Domains:
PF03810 - Importin-beta N-terminal domain
PF08506 - Cse1

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain
159612 - TBP-interacting protein-like

ModBase Predicted Comparative 3D Structure on O15397
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008536 Ran GTPase binding
GO:0008565 protein transporter activity

Biological Process:
GO:0006606 protein import into nucleus
GO:0006886 intracellular protein transport
GO:0007165 signal transduction
GO:0015031 protein transport
GO:0060964 regulation of gene silencing by miRNA

Cellular Component:
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LP895264 - Sequence 128 from Patent EP3253886.
AB209602 - Homo sapiens mRNA for importin 8 variant protein.
AK302260 - Homo sapiens cDNA FLJ55655 complete cds, highly similar to Importin-8.
U77494 - Homo sapiens RANBP8 mRNA, complete cds.
BC167853 - Synthetic construct Homo sapiens clone IMAGE:100068243, MGC:195860 importin 8 (IPO8) mRNA, encodes complete protein.
AK000201 - Homo sapiens cDNA FLJ20194 fis, clone COLF0888.
AK025607 - Homo sapiens cDNA: FLJ21954 fis, clone HEP05155.
BC018305 - Homo sapiens importin 8, mRNA (cDNA clone IMAGE:4153424), with apparent retained intron.
AK130090 - Homo sapiens cDNA FLJ26580 fis, clone LNF06936, highly similar to Homo sapiens RAN binding protein 8 (RANBP8) mRNA.
JD485563 - Sequence 466587 from Patent EP1572962.
JD436388 - Sequence 417412 from Patent EP1572962.
JD487853 - Sequence 468877 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O15397 (Reactome details) participates in the following event(s):

R-HSA-5578712 Importin-8 binds AGO2:miRNA
R-HSA-5578744 Importin-8 imports AGO2:miRNA into the nucleus
R-HSA-5578749 Transcriptional regulation by small RNAs
R-HSA-211000 Gene Silencing by RNA
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z7M3, ENST00000256079.1, ENST00000256079.2, ENST00000256079.3, ENST00000256079.4, ENST00000256079.5, ENST00000256079.6, ENST00000256079.7, ENST00000256079.8, IPO8_HUMAN, NM_006390, O15397, RANBP8, uc317ftl.1, uc317ftl.2
UCSC ID: ENST00000256079.9_7
RefSeq Accession: NM_006390.4
Protein: O15397 (aka IPO8_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene IPO8:
loeys-dietz (Loeys-Dietz Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.