Human Gene IPO5 (ENST00000651721.2_8) from GENCODE V47lift37
  Description: importin 5 (from RefSeq NM_002271.6)
Gencode Transcript: ENST00000651721.2_8
Gencode Gene: ENSG00000065150.21_14
Transcript (Including UTRs)
   Position: hg19 chr13:98,605,929-98,676,550 Size: 70,622 Total Exon Count: 29 Strand: +
Coding Region
   Position: hg19 chr13:98,628,951-98,674,076 Size: 45,126 Coding Exon Count: 26 

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Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:98,605,929-98,676,550)mRNA (may differ from genome)Protein (1097 aa)
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-  Comments and Description Text from UniProtKB
  ID: IPO5_HUMAN
DESCRIPTION: RecName: Full=Importin-5; Short=Imp5; AltName: Full=Importin subunit beta-3; AltName: Full=Karyopherin beta-3; AltName: Full=Ran-binding protein 5; Short=RanBP5;
FUNCTION: Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran- dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
SUBUNIT: Binds RPL23A, RPS7 and RPL5. Interacts with H2A, H2B, H3 and H4 histones (By similarity). Binds to HIV-1 Rev.
INTERACTION: O95166:GABARAP; NbExp=6; IntAct=EBI-356424, EBI-712001; Q9H0R8:GABARAPL1; NbExp=4; IntAct=EBI-356424, EBI-746969; P60520:GABARAPL2; NbExp=4; IntAct=EBI-356424, EBI-720116; Q9GZQ8:MAP1LC3B; NbExp=2; IntAct=EBI-356424, EBI-373144; Q9BXW4:MAP1LC3C; NbExp=2; IntAct=EBI-356424, EBI-2603996;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Nucleus, nucleolus. Note=Nucleus; nuclear rim. Found particularly in the nuclear rim and nucleolus.
SIMILARITY: Belongs to the importin beta family.
SIMILARITY: Contains 6 HEAT repeats.
SIMILARITY: Contains 1 importin N-terminal domain.
SEQUENCE CAUTION: Sequence=CAA70103.1; Type=Frameshift; Positions=18;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IPO5
Diseases sorted by gene-association score: hiv-1 (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.60234-0.255 Picture PostScript Text
3' UTR -623.202474-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR000357 - HEAT
IPR001494 - Importin-beta_N

Pfam Domains:
PF02985 - HEAT repeat
PF12755 - Vacuolar 14 Fab1-binding region
PF13513 - HEAT-like repeat
PF13646 - HEAT repeats
PF18808 - Importin repeat
PF18816 - Importin repeat
PF18829 - Importin repeat 6

SCOP Domains:
48371 - ARM repeat
48431 - Lipovitellin-phosvitin complex, superhelical domain

ModBase Predicted Comparative 3D Structure on O00410
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005095 GTPase inhibitor activity
GO:0005515 protein binding
GO:0008139 nuclear localization sequence binding
GO:0008536 Ran GTPase binding
GO:0008565 protein transporter activity

Biological Process:
GO:0000060 protein import into nucleus, translocation
GO:0006607 NLS-bearing protein import into nucleus
GO:0006610 ribosomal protein import into nucleus
GO:0006886 intracellular protein transport
GO:0015031 protein transport
GO:0016032 viral process
GO:0034260 negative regulation of GTPase activity
GO:0042307 positive regulation of protein import into nucleus
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0071230 cellular response to amino acid stimulus

Cellular Component:
GO:0005634 nucleus
GO:0005643 nuclear pore
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0031965 nuclear membrane
GO:0034399 nuclear periphery


-  Descriptions from all associated GenBank mRNAs
  BC045640 - Homo sapiens importin 5, mRNA (cDNA clone MGC:41882 IMAGE:5298410), complete cds.
Y08890 - Homo spaiens mRNA for Ran_GTP binding protein 5 (RanBP5(Importin5) gene).
JD436992 - Sequence 418016 from Patent EP1572962.
JD520930 - Sequence 501954 from Patent EP1572962.
JD168707 - Sequence 149731 from Patent EP1572962.
JD333951 - Sequence 314975 from Patent EP1572962.
KJ901544 - Synthetic construct Homo sapiens clone ccsbBroadEn_10938 IPO5 gene, encodes complete protein.
BX648222 - Homo sapiens mRNA; cDNA DKFZp686O1576 (from clone DKFZp686O1576).
AK303494 - Homo sapiens cDNA FLJ54573 complete cds, highly similar to Importin beta-3.
AK225286 - Homo sapiens mRNA for RAN binding protein 5 variant, clone: HEP00381.
BC001497 - Homo sapiens importin 5, mRNA (cDNA clone MGC:2068 IMAGE:2823581), complete cds.
BC019309 - Homo sapiens importin 5, mRNA (cDNA clone IMAGE:2823581), partial cds.
DQ893033 - Synthetic construct clone IMAGE:100005663; FLH191862.01X; RZPDo839H0977D RAN binding protein 5 (RANBP5) gene, encodes complete protein.
EU176755 - Synthetic construct Homo sapiens clone IMAGE:100011532; FLH191861.01L; RZPDo839G12255D RAN binding protein 5 (RANBP5) gene, encodes complete protein.
U72761 - Human karyopherin beta 3 mRNA, complete cds.
AK302812 - Homo sapiens cDNA FLJ54099 complete cds, highly similar to Importin beta-3.
AK125031 - Homo sapiens cDNA FLJ43041 fis, clone BRTHA3003339, highly similar to Importin beta-3.
BC000947 - Homo sapiens importin 5, mRNA (cDNA clone IMAGE:3450586), partial cds.
JD261152 - Sequence 242176 from Patent EP1572962.
JD467491 - Sequence 448515 from Patent EP1572962.
JD318854 - Sequence 299878 from Patent EP1572962.
AB074173 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla10120, full insert sequence.
AF339834 - Homo sapiens clone IMAGE:898206, mRNA sequence.
JD275528 - Sequence 256552 from Patent EP1572962.
JD208367 - Sequence 189391 from Patent EP1572962.
JD321664 - Sequence 302688 from Patent EP1572962.
JD075146 - Sequence 56170 from Patent EP1572962.
JD475660 - Sequence 456684 from Patent EP1572962.
JD262590 - Sequence 243614 from Patent EP1572962.
JD409983 - Sequence 391007 from Patent EP1572962.
JD545403 - Sequence 526427 from Patent EP1572962.
JD069214 - Sequence 50238 from Patent EP1572962.
JD233798 - Sequence 214822 from Patent EP1572962.
JD565272 - Sequence 546296 from Patent EP1572962.
JD272992 - Sequence 254016 from Patent EP1572962.
JD370827 - Sequence 351851 from Patent EP1572962.
JD403008 - Sequence 384032 from Patent EP1572962.
JD387043 - Sequence 368067 from Patent EP1572962.
JD531782 - Sequence 512806 from Patent EP1572962.
JD472927 - Sequence 453951 from Patent EP1572962.
JD344981 - Sequence 326005 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DZA0, ENST00000651721.1, IPO5_HUMAN, KPNB3, NM_002271, O00410, O15257, Q5T578, Q86XC7, RANBP5, uc328tin.1, uc328tin.2
UCSC ID: ENST00000651721.2_8
RefSeq Accession: NM_002271.6
Protein: O00410 (aka IPO5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.