Human Gene INO80C (ENST00000283410.4_3) from GENCODE V47lift37

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Description: INO80 complex subunit C (from HGNC INO80C)
Gencode Transcript: ENST00000283410.4_3
Gencode Gene: ENSG00000153391.16_10
Transcript (Including UTRs)
Position: hg19 chr18:33,058,959-33,077,943 Size: 18,985 Total Exon Count: 3 Strand: -

Page Index	Sequence and Links	Primers	CTD	RNA-Seq Expression	Other Species
mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr18:33,058,959-33,077,943)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
BioGPS	Ensembl	ExonPrimer	HGNC	PubMed	Wikipedia

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide D001564 Benzo(a)pyrene D002110 Caffeine D016572 Cyclosporine D007649 Ketamine D018817 N-Methyl-3,4-methylenedioxyamphetamine D013749 Tetrachlorodibenzodioxin D014635 Valproic Acid D015032 Zinc C013598 methoxyacetic acid more ... click here to view the complete list

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 15.56 RPKM in Testis Total median expression: 139.28 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	AK095502 - Homo sapiens cDNA FLJ38183 fis, clone FCBBF1000155. BC048989 - Homo sapiens INO80 complex subunit C, mRNA (cDNA clone IMAGE:5270755). BC039404 - Homo sapiens INO80 complex subunit C, mRNA (cDNA clone MGC:44599 IMAGE:5300795), complete cds. AK300660 - Homo sapiens cDNA FLJ58388 complete cds. KJ903719 - Synthetic construct Homo sapiens clone ccsbBroadEn_13113 INO80C gene, encodes complete protein. JD500108 - Sequence 481132 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: BC039404, ENST00000283410.1, ENST00000283410.2, ENST00000283410.3, uc317kco.1 UCSC ID: ENST00000283410.4_3 RefSeq Accession: NM_194281.4

Gene Model Information


	Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.