Human Gene INCENP (ENST00000394818.8_8) from GENCODE V47lift37
  Description: inner centromere protein, transcript variant 1 (from RefSeq NM_001040694.2)
Gencode Transcript: ENST00000394818.8_8
Gencode Gene: ENSG00000149503.14_12
Transcript (Including UTRs)
   Position: hg19 chr11:61,891,483-61,920,641 Size: 29,159 Total Exon Count: 19 Strand: +
Coding Region
   Position: hg19 chr11:61,895,634-61,919,448 Size: 23,815 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:61,891,483-61,920,641)mRNA (may differ from genome)Protein (918 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: INCE_HUMAN
DESCRIPTION: RecName: Full=Inner centromere protein;
FUNCTION: Component of the chromosomal passenger complex (CPC), a complex that acts as a key regulator of mitosis. The CPC complex has essential functions at the centromere in ensuring correct chromosome alignment and segregation and is required for chromatin-induced microtubule stabilization and spindle assembly. Probably acts through association with AURKB or AURKC. Seems to bind directly to microtubules. Controls the kinetochore localization of BUB1.
SUBUNIT: Homodimer or heterodimer. Interacts with H2AFZ (By similarity). Interacts with CBX3. Interacts with tubulin beta chain. Interacts with AURKB and AURKC. Component of the chromosomal passenger complex (CPC) composed of at least BIRC5/survivin, CDCA8/borealin, INCENP, AURKB and AURKC. Interacts with EVI5. Interacts with CDCA8 and BIRC5; interaction is direct. Interacts with CBX5; POGZ and INCENP compete for interaction with CBX5. Interacts with POGZ. Interacts with JTB.
INTERACTION: Q96GD4:AURKB; NbExp=3; IntAct=EBI-307907, EBI-624291; P45973:CBX5; NbExp=6; IntAct=EBI-307907, EBI-78219; Q53HL2:CDCA8; NbExp=4; IntAct=EBI-307907, EBI-979174;
SUBCELLULAR LOCATION: Chromosome, centromere. Cytoplasm, cytoskeleton, spindle. Nucleus. Chromosome, centromere, kinetochore. Note=Localizes to inner kinetochore. Localizes on chromosome arms and inner centromeres from prophase through metaphase and then transferring to the spindle midzone and midbody from anaphase through cytokinesis. Colocalizes with AURKB at mitotic chromosomes.
PTM: Phosphorylation by AURKB at its C-terminal part is important for AURKB activation by INCENP.
SIMILARITY: Belongs to the INCENP family.
CAUTION: PubMed:11139336 experiments have been carried out partly in chicken and partly in human.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: INCENP
Diseases sorted by gene-association score: roberts syndrome (13), graham-little-piccardi-lassueur syndrome (13)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C036990 2-amino-3,8-dimethylimidazo(4,5-f)quinoxaline
  • C009505 4,4'-diaminodiphenylmethane
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • C547126 AZM551248
  • D000082 Acetaminophen
  • D001564 Benzo(a)pyrene
  • D002117 Calcitriol
  • D002251 Carbon Tetrachloride
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.43 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 160.27 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -82.50164-0.503 Picture PostScript Text
3' UTR -423.501193-0.355 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022006 - INCENP_N
IPR005635 - Inner_centromere_prot_ARK-bd

Pfam Domains:
PF03941 - Inner centromere protein, ARK binding region
PF12178 - Chromosome passenger complex (CPC) protein INCENP N terminal

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2QFA - X-ray MuPIT 4AF3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NQS7
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000281 mitotic cytokinesis
GO:0007049 cell cycle
GO:0007059 chromosome segregation
GO:0051301 cell division

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0000795 synaptonemal complex
GO:0000800 lateral element
GO:0000801 central element
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005721 pericentric heterochromatin
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0010369 chromocenter
GO:0016604 nuclear body
GO:0030496 midbody
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AK307633 - Homo sapiens cDNA, FLJ97581.
BC098576 - Homo sapiens inner centromere protein antigens 135/155kDa, mRNA (cDNA clone MGC:111393 IMAGE:30924748), complete cds.
AK056195 - Homo sapiens cDNA FLJ31633 fis, clone NT2RI2003407, highly similar to Inner centromere protein.
AK310714 - Homo sapiens cDNA, FLJ17756.
BC032678 - Homo sapiens inner centromere protein antigens 135/155kDa, mRNA (cDNA clone IMAGE:5563252).
AY714053 - Homo sapiens inner centromere protein (INCENP) mRNA, complete cds.
AF282265 - Homo sapiens inner centromere protein INCENP mRNA, complete cds.
BC111732 - Homo sapiens inner centromere protein antigens 135/155kDa, mRNA (cDNA clone IMAGE:40035563), containing frame-shift errors.
JD215520 - Sequence 196544 from Patent EP1572962.
JD479650 - Sequence 460674 from Patent EP1572962.
JD493496 - Sequence 474520 from Patent EP1572962.
JD178312 - Sequence 159336 from Patent EP1572962.
JD373079 - Sequence 354103 from Patent EP1572962.
JD261928 - Sequence 242952 from Patent EP1572962.
JD204524 - Sequence 185548 from Patent EP1572962.
JD435966 - Sequence 416990 from Patent EP1572962.
JD205393 - Sequence 186417 from Patent EP1572962.
JD330587 - Sequence 311611 from Patent EP1572962.
JD188807 - Sequence 169831 from Patent EP1572962.
JD548969 - Sequence 529993 from Patent EP1572962.
JD161995 - Sequence 143019 from Patent EP1572962.
JD548632 - Sequence 529656 from Patent EP1572962.
JD429957 - Sequence 410981 from Patent EP1572962.
JD272464 - Sequence 253488 from Patent EP1572962.
JD535962 - Sequence 516986 from Patent EP1572962.
JD497292 - Sequence 478316 from Patent EP1572962.
JD210211 - Sequence 191235 from Patent EP1572962.
JD207352 - Sequence 188376 from Patent EP1572962.
JD480360 - Sequence 461384 from Patent EP1572962.
JD466679 - Sequence 447703 from Patent EP1572962.
JD220652 - Sequence 201676 from Patent EP1572962.
JD483623 - Sequence 464647 from Patent EP1572962.
JD375838 - Sequence 356862 from Patent EP1572962.
JD320332 - Sequence 301356 from Patent EP1572962.
JD515740 - Sequence 496764 from Patent EP1572962.
JD147528 - Sequence 128552 from Patent EP1572962.
JD351178 - Sequence 332202 from Patent EP1572962.
JD055603 - Sequence 36627 from Patent EP1572962.
JD200767 - Sequence 181791 from Patent EP1572962.
JD200065 - Sequence 181089 from Patent EP1572962.
JD181206 - Sequence 162230 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NQS7 (Reactome details) participates in the following event(s):

R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-4615885 SUMOylation of DNA replication proteins
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteins
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-2990846 SUMOylation
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1640170 Cell Cycle
R-HSA-162582 Signal Transduction
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A8MQD2, ENST00000394818.1, ENST00000394818.2, ENST00000394818.3, ENST00000394818.4, ENST00000394818.5, ENST00000394818.6, ENST00000394818.7, INCE_HUMAN, NM_001040694, Q5Y192, Q9NQS7, uc318wxv.1, uc318wxv.2
UCSC ID: ENST00000394818.8_8
RefSeq Accession: NM_001040694.2
Protein: Q9NQS7 (aka INCE_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.