Human Gene IL22RA2 (ENST00000296980.7_7) from GENCODE V47lift37
  Description: interleukin 22 receptor subunit alpha 2, transcript variant 1 (from RefSeq NM_052962.3)
Gencode Transcript: ENST00000296980.7_7
Gencode Gene: ENSG00000164485.15_10
Transcript (Including UTRs)
   Position: hg19 chr6:137,464,957-137,494,781 Size: 29,825 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr6:137,466,761-137,482,886 Size: 16,126 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:137,464,957-137,494,781)mRNA (may differ from genome)Protein (263 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: I22R2_HUMAN
DESCRIPTION: RecName: Full=Interleukin-22 receptor subunit alpha-2; Short=IL-22 receptor subunit alpha-2; Short=IL-22R-alpha-2; Short=IL-22RA2; AltName: Full=Cytokine receptor class-II member 10; AltName: Full=Cytokine receptor family 2 member 10; Short=CRF2-10; AltName: Full=Cytokine receptor family type 2, soluble 1; Short=CRF2-S1; AltName: Full=Interleukin-22-binding protein; Short=IL-22BP; Short=IL22BP; AltName: Full=ZcytoR16; Flags: Precursor;
FUNCTION: Isoform 2 is a receptor for IL22. Binds to IL22, prevents interaction with the functional IL-22R complex and blocks the activity of IL22 (in vitro). May play an important role as an IL22 antagonist in the regulation of inflammatory responses.
FUNCTION: Isoform 1 may play a role in establishing and maintaining successful pregnancy.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Expressed in placenta, spleen, breast, skin and lung. Also detected in intestinal tract, testis, brain, heart and thymus. No expression found in prostate, bladder, kidney, ovary, muscle, bone marrow, liver and uterus. Isoform 1 is expressed only in placenta. Isoform 2 is expressed in placenta and breast and at lower level in spleen, skin, thymus and stomach.
SIMILARITY: Belongs to the type II cytokine receptor family.
SIMILARITY: Contains 3 fibronectin type-III domains.
SEQUENCE CAUTION: Sequence=AAQ89097.1; Type=Erroneous initiation;
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/il22ra2/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.12 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 0.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.40297-0.187 Picture PostScript Text
3' UTR -441.501804-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR013783 - Ig-like_fold
IPR015373 - Interferon_alpha/beta_rcpt_bsu

Pfam Domains:
PF01108 - Tissue factor
PF09294 - Interferon-alpha/beta receptor, fibronectin type III

SCOP Domains:
49265 - Fibronectin type III

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3G9V - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q969J5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0042017 interleukin-22 binding
GO:0042018 interleukin-22 receptor activity

Biological Process:
GO:0019221 cytokine-mediated signaling pathway
GO:0042509 regulation of tyrosine phosphorylation of STAT protein
GO:0050728 negative regulation of inflammatory response

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AY040566 - Homo sapiens interleukin 22-binding protein CRF2-10 (IL22BP) mRNA, complete cds.
AY040567 - Homo sapiens interleukin 22-binding protein CRF2-10L (IL22BP) mRNA, complete cds, alternatively spliced.
AY040568 - Homo sapiens interleukin 22-binding protein CRF2-10S (IL22BP) mRNA, complete cds, alternatively spliced.
AY044429 - Homo sapiens class II cytokine receptor (IL22RA2) mRNA, complete cds.
AY358111 - Homo sapiens clone DNA149927 IL22RA2 (UNQ5793) mRNA, complete cds.
AJ313161 - Homo sapiens mRNA for soluble cytokine class II receptor, short isoform (CRF2-S1 gene).
AJ313162 - Homo sapiens mRNA for soluble cytokine class II receptor, long isoform (CRF2-S1 gene).
AY358737 - Homo sapiens clone DNA145887 IL22RA2 (UNQ5793) mRNA, complete cds.
JD528265 - Sequence 509289 from Patent EP1572962.
JD506861 - Sequence 487885 from Patent EP1572962.
JD447507 - Sequence 428531 from Patent EP1572962.
JD398892 - Sequence 379916 from Patent EP1572962.
JD219681 - Sequence 200705 from Patent EP1572962.
JD261940 - Sequence 242964 from Patent EP1572962.
BC125167 - Homo sapiens interleukin 22 receptor, alpha 2, mRNA (cDNA clone MGC:150509 IMAGE:40121609), complete cds.
BC125168 - Homo sapiens interleukin 22 receptor, alpha 2, mRNA (cDNA clone MGC:150510 IMAGE:40121612), complete cds.
JD512201 - Sequence 493225 from Patent EP1572962.
JD037276 - Sequence 18300 from Patent EP1572962.
JD086090 - Sequence 67114 from Patent EP1572962.
AJ297262 - Homo sapiens mRNA for interleukin-22 binding protein (IL-22BP gene).
KJ895314 - Synthetic construct Homo sapiens clone ccsbBroadEn_04708 IL22RA2 gene, encodes complete protein.
JD063811 - Sequence 44835 from Patent EP1572962.
JD258011 - Sequence 239035 from Patent EP1572962.
JD417393 - Sequence 398417 from Patent EP1572962.
JD368113 - Sequence 349137 from Patent EP1572962.
JD233886 - Sequence 214910 from Patent EP1572962.
JD082867 - Sequence 63891 from Patent EP1572962.
JD348356 - Sequence 329380 from Patent EP1572962.
JD486939 - Sequence 467963 from Patent EP1572962.
JD348925 - Sequence 329949 from Patent EP1572962.
JD509516 - Sequence 490540 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q969J5 (Reactome details) participates in the following event(s):

R-HSA-448741 IL22RA2 binds IL22
R-HSA-8854691 Interleukin-20 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000296980.1, ENST00000296980.2, ENST00000296980.3, ENST00000296980.4, ENST00000296980.5, ENST00000296980.6, I22R2_HUMAN, NM_052962, Q08AH7, Q6UWM1, Q969J5, Q96A41, Q96QR0, uc317lxw.1, uc317lxw.2, UNQ5793/PRO19598/PRO19822
UCSC ID: ENST00000296980.7_7
RefSeq Accession: NM_052962.3
Protein: Q969J5 (aka I22R2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.