Human Gene IKZF4 (ENST00000547167.6_5) from GENCODE V47lift37
  Description: IKAROS family zinc finger 4, transcript variant 1 (from RefSeq NM_022465.4)
Gencode Transcript: ENST00000547167.6_5
Gencode Gene: ENSG00000123411.15_10
Transcript (Including UTRs)
   Position: hg19 chr12:56,414,827-56,432,219 Size: 17,393 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg19 chr12:56,415,278-56,429,115 Size: 13,838 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:56,414,827-56,432,219)mRNA (may differ from genome)Protein (585 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IKZF4_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein Eos; AltName: Full=Ikaros family zinc finger protein 4;
FUNCTION: DNA-binding protein that binds to the 5'GGGAATRCC-3' Ikaros-binding sequence. Transcriptional repressor. Interacts with SPI1 and MITF to repress transcription of the CTSK and ACP5 promoters via recruitment of corepressors SIN3A and CTBP2. May be involved in the development of central and peripheral nervous systems.
SUBUNIT: Self-associates. Interacts with other family members; IKZF1, IKZF2, IKZF3 AND IKZF5. Interacts with CTBP2, SPI1 and MITF (By similarity).
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Highly expressed in skeletal muscle, low levels of expression in heart, thymus, kidney, liver, and spleen. Expressed in the hematopoietic cell lines MOLT-4, NALM-6 and K- 562. Highly expressed in THP-1 and M-07e cell lines, which have characteristics of myeloid and early megakaryocytic cells respectively.
DOMAIN: The N-terminal zinc fingers are involved in sequence- specific DNA binding and heterotypic associations with other family members.
DOMAIN: C-terminal zinc fingers mediate homodimerization.
MISCELLANEOUS: 'Eos' means 'rising sun' in Greek.
SIMILARITY: Belongs to the Ikaros C2H2-type zinc-finger protein family.
SIMILARITY: Contains 6 C2H2-type zinc fingers.
SEQUENCE CAUTION: Sequence=AAG39221.1; Type=Erroneous initiation; Sequence=BAB47411.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.05 RPKM in Adrenal Gland
Total median expression: 148.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -132.53451-0.294 Picture PostScript Text
3' UTR -900.503104-0.290 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF13894 - C2H2-type zinc finger
PF13912 - C2H2-type zinc finger

SCOP Domains:
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on Q9H2S9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0008270 zinc ion binding
GO:0019904 protein domain specific binding
GO:0042803 protein homodimerization activity
GO:0043425 bHLH transcription factor binding
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051260 protein homooligomerization
GO:0051291 protein heterooligomerization

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016604 nuclear body
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AB384637 - Synthetic construct DNA, clone: pF1KA1782, Homo sapiens IKZF4 gene for zinc finger protein, subfamily 1A, 4, complete cds, without stop codon, in Flexi system.
BX647761 - Homo sapiens mRNA; cDNA DKFZp686K2231 (from clone DKFZp686K2231).
AK122880 - Homo sapiens cDNA FLJ16522 fis, clone NT2RP7004481, highly similar to Homo sapiens zinc finger protein, subfamily 1A, 4 (Eos) (ZNFN1A4), mRNA.
AK314543 - Homo sapiens cDNA, FLJ95365, highly similar to Homo sapiens zinc finger protein, subfamily 1A, 4 (Eos) (ZNFN1A4), mRNA.
BC160169 - Synthetic construct Homo sapiens clone IMAGE:100064201, MGC:193284 IKAROS family zinc finger 4 (Eos) (IKZF4) mRNA, encodes complete protein.
AF230809 - Homo sapiens zinc finger transcription factor Eos mRNA, complete cds.
AB058685 - Homo sapiens mRNA for KIAA1782 protein, partial cds.
JD067688 - Sequence 48712 from Patent EP1572962.
JD040035 - Sequence 21059 from Patent EP1572962.
JD188680 - Sequence 169704 from Patent EP1572962.
AK055063 - Homo sapiens cDNA FLJ30501 fis, clone BRAWH2000476.
AK055970 - Homo sapiens cDNA FLJ31408 fis, clone NT2NE2000156.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000547167.1, ENST00000547167.2, ENST00000547167.3, ENST00000547167.4, ENST00000547167.5, IKZF4_HUMAN, KIAA1782, NM_022465, Q96JP3, Q9H2S9, uc324ybo.1, uc324ybo.2, ZNFN1A4
UCSC ID: ENST00000547167.6_5
RefSeq Accession: NM_022465.4
Protein: Q9H2S9 (aka IKZF4_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
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