Human Gene HTR1E (ENST00000305344.7_4) from GENCODE V47lift37
  Description: 5-hydroxytryptamine receptor 1E (from RefSeq NM_000865.3)
Gencode Transcript: ENST00000305344.7_4
Gencode Gene: ENSG00000168830.8_8
Transcript (Including UTRs)
   Position: hg19 chr6:87,647,246-87,726,397 Size: 79,152 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr6:87,725,053-87,726,150 Size: 1,098 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:87,647,246-87,726,397)mRNA (may differ from genome)Protein (365 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
Human Cortex Gene ExpressionMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: 5HT1E_HUMAN
DESCRIPTION: RecName: Full=5-hydroxytryptamine receptor 1E; Short=5-HT-1E; Short=5-HT1E; AltName: Full=S31; AltName: Full=Serotonin receptor 1E;
FUNCTION: This is one of the several different receptors for 5- hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that inhibit adenylate cyclase activity.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HTR1E
Diseases sorted by gene-association score: spherocytosis, type 3 (2), attention deficit-hyperactivity disorder (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.45 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 15.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -173.80481-0.361 Picture PostScript Text
3' UTR -47.50247-0.192 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002231 - 5HT_rcpt
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx
PF10328 - Serpentine type 7TM GPCR chemoreceptor Srx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P28566
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004993 G-protein coupled serotonin receptor activity
GO:0005515 protein binding
GO:0030594 neurotransmitter receptor activity
GO:0051378 serotonin binding

Biological Process:
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger
GO:0007193 adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway
GO:0007268 chemical synaptic transmission
GO:0030815 negative regulation of cAMP metabolic process

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  M91467 - Human serotonin receptor (5HT1E) mRNA, complete cds.
BC069751 - Homo sapiens 5-hydroxytryptamine (serotonin) receptor 1E, mRNA (cDNA clone MGC:97353 IMAGE:7262611), complete cds.
CU686998 - Synthetic construct Homo sapiens gateway clone IMAGE:100022637 5' read HTR1E mRNA.
AB463384 - Synthetic construct DNA, clone: pF1KB7159, Homo sapiens HTR1E gene for 5-hydroxytryptamine (serotonin) receptor 1E, without stop codon, in Flexi system.
KJ897023 - Synthetic construct Homo sapiens clone ccsbBroadEn_06417 HTR1E gene, encodes complete protein.
AF498980 - Homo sapiens 5-hydroxytryptamine receptor 1E (HTR1E) mRNA, complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P28566 (Reactome details) participates in the following event(s):

R-HSA-390929 5-HT1 and 5A receptors can bind serotonin
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-390666 Serotonin receptors
R-HSA-418594 G alpha (i) signalling events
R-HSA-375280 Amine ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: 5HT1E_HUMAN, E1P503, ENST00000305344.1, ENST00000305344.2, ENST00000305344.3, ENST00000305344.4, ENST00000305344.5, ENST00000305344.6, NM_000865, P28566, Q9P1Y1, uc317npo.1, uc317npo.2
UCSC ID: ENST00000305344.7_4
RefSeq Accession: NM_000865.3
Protein: P28566 (aka 5HT1E_HUMAN or 5H1E_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.