Human Gene HSPA1L (ENST00000375654.5_8) from GENCODE V47lift37
  Description: heat shock protein family A (Hsp70) member 1 like (from RefSeq NM_005527.4)
Gencode Transcript: ENST00000375654.5_8
Gencode Gene: ENSG00000204390.10_11
Transcript (Including UTRs)
   Position: hg19 chr6:31,777,396-31,783,060 Size: 5,665 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr6:31,777,824-31,779,749 Size: 1,926 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:31,777,396-31,783,060)mRNA (may differ from genome)Protein (641 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HS71L_HUMAN
DESCRIPTION: RecName: Full=Heat shock 70 kDa protein 1-like; Short=Heat shock 70 kDa protein 1L; AltName: Full=Heat shock 70 kDa protein 1-Hom; Short=HSP70-Hom;
FUNCTION: In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage (By similarity).
TISSUE SPECIFICITY: Expressed in spermatids.
INDUCTION: Not induced by heat shock.
SIMILARITY: Belongs to the heat shock protein 70 family.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/hspa1l/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HSPA1L
Diseases sorted by gene-association score: pneumoconiosis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.81 RPKM in Testis
Total median expression: 137.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -175.90408-0.431 Picture PostScript Text
3' UTR -89.70428-0.210 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018181 - Heat_shock_70_CS
IPR013126 - Hsp_70_fam

Pfam Domains:
PF00012 - Hsp70 protein
PF06723 - MreB/Mbl protein

SCOP Domains:
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
53067 - Actin-like ATPase domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3GDQ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P34931
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0031072 heat shock protein binding
GO:0031625 ubiquitin protein ligase binding
GO:0051082 unfolded protein binding

Biological Process:
GO:0006986 response to unfolded protein
GO:0007339 binding of sperm to zona pellucida
GO:0042026 protein refolding
GO:1900034 regulation of cellular response to heat
GO:1903955 positive regulation of protein targeting to mitochondrion

Cellular Component:
GO:0002199 zona pellucida receptor complex
GO:0005654 nucleoplasm
GO:0005829 cytosol
GO:0044297 cell body
GO:0072562 blood microparticle
GO:0008180 COP9 signalosome


-  Descriptions from all associated GenBank mRNAs
  JD549961 - Sequence 530985 from Patent EP1572962.
JD378556 - Sequence 359580 from Patent EP1572962.
JD483970 - Sequence 464994 from Patent EP1572962.
JD490661 - Sequence 471685 from Patent EP1572962.
BC034483 - Homo sapiens heat shock 70kDa protein 1-like, mRNA (cDNA clone MGC:26463 IMAGE:4824979), complete cds.
AK223386 - Homo sapiens mRNA for heat shock 70kDa protein 1-like variant, clone: FCC106F11.
D85730 - Homo sapiens HSPA1L mRNA for heat shock protein 70 testis variant, complete cds.
JD290587 - Sequence 271611 from Patent EP1572962.
AK295416 - Homo sapiens cDNA FLJ56386 complete cds, highly similar to Heat shock 70 kDa protein 1L.
AK302179 - Homo sapiens cDNA FLJ56517 complete cds, highly similar to Heat shock 70 kDa protein 1L.
GQ891337 - Homo sapiens clone HEL-S-108d epididymis secretory sperm binding protein mRNA, complete cds.
AK315227 - Homo sapiens cDNA, FLJ96225, highly similar to Homo sapiens heat shock 70kDa protein 1-like (HSPA1L), mRNA.
KJ897013 - Synthetic construct Homo sapiens clone ccsbBroadEn_06407 HSPA1L gene, encodes complete protein.
AM392545 - Synthetic construct Homo sapiens clone IMAGE:100002617 for hypothetical protein (HSPA1L gene).
AM392811 - Synthetic construct Homo sapiens clone IMAGE:100002885 for hypothetical protein (HSPA1L gene).
AM393413 - Synthetic construct Homo sapiens clone IMAGE:100002886 for hypothetical protein (HSPA1L gene).
AB587491 - Synthetic construct DNA, clone: pF1KB8708, Homo sapiens HSPA1L gene for heat shock 70kDa protein 1-like, without stop codon, in Flexi system.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P34931 (Reactome details) participates in the following event(s):

R-HSA-5251942 Hikeshi binds HSP70s:ATP
R-HSA-5251959 HSP40s activate intrinsic ATPase activity of HSP70s in the cytosol
R-HSA-5252079 HSP110s exchange ATP for ADP on HSP70s:ADP
R-HSA-3371503 STIP1(HOP) binds HSP90 and HSP70:HSP40:nascent protein
R-HSA-3371422 ATP hydrolysis by HSP70
R-HSA-3371590 HSP70 binds to HSP40:nascent protein
R-HSA-5618098 p23 (PTGES3) binds HSP90:ATP:FKBP5:nascent protein
R-HSA-5618110 p23 (PTGES3) binds HSP90:ATP:FKBP4:nascent protein
R-HSA-5251955 HSP40s activate intrinsic ATPase activity of HSP70s in the nucleoplasm
R-HSA-5082384 HSP70:DNAJB1 binds HSF1
R-HSA-5252041 NPC transports Hikeshi:HSP70s:ATP from cytosol to nucleoplasm
R-HSA-5618085 FKBP4 binds HSP90:ATP:STIP1:HSP70:nascent protein
R-HSA-5618105 FKBP5 binds HSP90:ATP:STIP1:HSP70:nascent protein
R-HSA-5618107 ATP binding to HSP90 triggers conformation change
R-HSA-5082369 Acetylated HSF1 dissociates from DNA
R-HSA-3371518 SIRT1 binds to HSF1
R-HSA-3371554 HSF1 acetylation at Lys80
R-HSA-3371467 SIRT1 deacetylates HSF1
R-HSA-3371571 HSF1-dependent transactivation
R-HSA-3371453 Regulation of HSF1-mediated heat shock response
R-HSA-3371497 HSP90 chaperone cycle for steroid hormone receptors (SHR)
R-HSA-3371556 Cellular response to heat stress
R-HSA-3371568 Attenuation phase
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: A6NNB0, B0UXW8, ENST00000375654.1, ENST00000375654.2, ENST00000375654.3, ENST00000375654.4, HS71L_HUMAN, NM_005527, O75634, P34931, Q2HXR3, Q8NE72, Q96QC9, Q9UQM1, uc318mkq.1, uc318mkq.2
UCSC ID: ENST00000375654.5_8
RefSeq Accession: NM_005527.4
Protein: P34931 (aka HS71L_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.